Panicum virgatum (switchgrass): 120654494
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Entry
120654494 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor RS41-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120654494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120654494
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120654494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
SET_assoc
Nup35_RRM_2
RNA_bind
Motif
Other DBs
NCBI-GeneID:
120654494
NCBI-ProteinID:
XP_039787970
LinkDB
All DBs
Position
1N:complement(1888321..1892357)
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AA seq
290 aa
AA seq
DB search
MRPVFCGNLDYDVRISEIERLFGKYGRVERVDLKTGFAFVYMEEERDAEDAINRLDGIDF
GRKGRRIKVEWTKEDRSAGRKGSLRRSPTSARPTKTLFVINFDPINTRIRDLERHFDKYG
RVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDERGERGNGYSP
DRRGRERSPGRRRSPSPYGRGRERGSPDYGRARGRGSPDYGRGGDRRSPDYGSNGGGRGD
ERGSPNYDRERREASPRRERREASPRRERRGASPGYDRPPSSSPGRDERE
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgaggccagttttttgtgggaaccttgactacgacgtccgcatttccgagatcgagcga
ctttttggcaagtatggaagagtggaacgagtggatctaaagacagggtttgcgttcgtc
tacatggaagaagaacgtgatgctgaagatgctatcaatagacttgatggaattgatttt
ggcaggaaaggaaggagaatcaaagttgagtggacaaaggaggatcgaagtgctggtcga
aaaggcagcttgaggagatctccaaccagtgcaaggccgaccaaaaccttgtttgtcatc
aactttgacccaatcaacacaagaattcgagatctggagaggcactttgataaatatggc
agggttgcgaatgtgagaatcaaaaagaactttgcatttgtccagttcgaggtacaggag
gatgctactagagcattggagggtactaatggaagccatttcatggacagggtcatctca
gttgaatatgcacttcgtgatgatgatgaaagaggtgaaagagggaatggatacagccca
gacaggagaggtcgtgaaagatccccaggtagaaggcgatctccaagtccttatggcaga
ggacgggagaggggtagccctgactatggaagagcacgggggagggggagcccggactat
ggcaggggaggtgacaggcgtagccctgattatggctcaaatggcggtggcagaggtgac
gagaggggcagccccaactacgaccgcgagcgccgtgaagctagccctcgtcgtgagcgc
cgtgaagccagccctcgtcgcgaacgccgtggagccagtcctggctatgacaggcccccc
agcagctcgcctggaagggatgagagagaataa
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