Panicum virgatum (switchgrass): 120654510
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Entry
120654510 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120654510 isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120654510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120654510
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120654510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
WDR55
Beta-prop_EML_2
Beta-prop_EML
TPR_VPS8_2
ANAPC4_WD40
WD40_CDC20-Fz
TPR_Vps41
Beta-prop_HPS5
WD40_WDHD1_1st
Clathrin
Beta-prop_TEP1_2nd
WD40
WD40_Prp19
Beta-prop_IFT140_1st
zf-RING_Vps41
zf_RING_Vps8
PEP5_VPS11_N
Beta-prop_LRRK2
Beta-prop_RIG_2nd
Herpes_pp85
Motif
Other DBs
NCBI-GeneID:
120654510
NCBI-ProteinID:
XP_039787995
LinkDB
All DBs
Position
1N:2289835..2302208
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AA seq
1907 aa
AA seq
DB search
MPSASLSAMASQHPPPRQELDLDAFLPSSPTSSAASDADADHRRAVDDLLLLLSSSDSDS
EESTPIASTRIRAPARVQAPAPPAEPSPLRSPSASSSPSPRRSTSASPSETLSSLVARTF
SSNSASSSSSKPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRSASASIGK
LLEEGSGSEASEELPSTGSLEAEVEEKGNSEVVPEPTEQTVSGNVTDEFEDEKHGKVEIE
ESSESMKLVEASTLDSVVPDDFSEYEQTAENGNLVETDKIENKNVVVYEGNANDQTGDDD
YMQSAQGMDPAGSVSEESFDDDQEADRSVEEQVESESLIDKVIEERMEQLEIGRKAEKNT
EKKQKVSMKPLEWAEELEKRQASFGQHWEEGAAAQPMQLEGIGKGPPAIGYMQIEMDNPV
TRAMSSPSFRPDHGSPQVLAVHRSYIAMGTSKGAVIVIPSKYSIHQADDTDAKMLFFWNQ
GEKTQSPVTAMCFNQQGDLLLVGYADGHMTIWDVQKGTAAKVIYGEHMAPVVHVCFIRQS
KAITGDSKGVVLLHTFSIIPVINRLTVKGTQRLFDGNTGIVLSACPLLVDESFGFSNSSA
QANQTTSSSGSGLGSMMGGVVGGVVGVDSGWKFFNESSSTVEDGVVVMFIMYQHALVVRL
RTNIDHVDHIETFSRPDGAREGSIAYAAWKYTSSFSDSSSLDEERVSWLALAWDRQVQVA
KFVKSKIVKHKEWKLDSAAIGVAWLDDQMLVVLNVRGQLCLFSKDGSELRRTTFVPDGLL
FDDTILHHAHFSNKFGNPERHFNSSVAVRGATVYILGPTFLTVSRLLPWKERIEALKRAG
DWMGALDMAMRLYDGQTQGVVDLPRTVDSIREAIMPYLVELLLSYISYVFEYISISLSSH
TGKGGETDALIEADRSLLTQREEQYARVGGVAVEYCVHIGRNDILFDTVFSKFVAAQSGG
MFLEVLEPYILKDMLGSLPPEIMQALVEHYSGKGWLQRVEQCILHMDISSLDFNQVVRLC
REHGLYGALIYLFNQGLNDFRTPLEELLSVIQNSNRKDAASTGYRMLVYLKYCFQGLAFP
PGHGIIPRSRLHSVREELLQFLLEESKSLTSEVFKGFSASCGKCPNICYLLWMDTEATLE
VLKCAFAQDSIEPRDELSGTANAPASEDEDGIVAGNPGSQNNMVQNVMDAIVDIVGLENE
VIRSVVMGTADSEFWPSEKEFGYLIEFVSFFVSHKRAIASKRVVMHILTYLTSSYDDTRT
RTQKEKEVIQLFNAVPQNDWNSDFVLDLCSDAHFHQACGLIFTTRNQNLAALDSYMKDKE
EPFHAFIFIDKRLFKLADDEALSFRTTVISRFPELVKLSRECAFVLVTDHFCDKVQQILA
ELQSDRHSLFLFLKTAIEVHLSGKLDFSKLSVRNNQTVELQYSSTDLEDYHQRLSNIKLD
HNPVSIDDELVELYLELLCQYERRSVLKFLETFDSYRLERCLHLCLDYGVTDAAAFLQER
VGDVGSALALILAGLDEKISVFISSVENTLSDVAAKGTSETEIVLEMNEAHPVLDALHAS
IGLCQRNSQRLDPEESQSLWFQLLDSFSEPLKKLYGSNDVNEKSARSKGSEAPIEHLKGK
ALSQRIKISAKQRCLNVLRKIFSQFVGEIIEAMAGYIPLPAIMAKLLSDNGNQEFGDFKL
VIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVCCICNCSLSKEG
AISAIRLFSCGHATHLQCESEQSRSSSQESKDGCPVCLSTSNTQARNRSHMVDNGLVKFS
GTEQELSHGIHQTHEVDHAERSRGLQHMSRYEILSNLQKEQKSFHIETVPPLKLAPPAIY
HEKIQKRTTSVGEPSKHLVRGQNPRKIWQMKEQKSSVFRELLPSLTS
NT seq
5724 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggcgtcgttgtcggcgatggcgtcgcagcatccgccgccgcggcaggagctc
gacctcgacgcgttcctcccctcctctccaacctcctccgcggcctccgatgccgacgcc
gaccaccgccgcgccgtcgacgacctcctgctgctcctctcctcgtcggactccgactcc
gaggagtccacccccatcgccagcaccagaatccgagccccagcccgcgtacaagccccg
gcgccgcccgctgagccctcgccgctgcgttccccgtccgcgtcctcgtccccgtccccg
aggagatccacatccgcctcgccgtcggagaccctctcctccctcgtcgcgagaaccttc
tccagcaacagcgcctcctcttcctcgtcgaagccactgccctcgctcttccgcggcgtc
cgccccagccccaagcccggcgccgcgctggccgccgctgccgcggcatcccgcgcggtc
cttaccccgcacgcggctgcaatcaagtcccgccgatcagcctcggcgtccatcgggaag
ctcctggaggagggcagtggctccgaggcttccgaggagctcccttccactggaagcttg
gaagcagaggtagaagaaaaggggaactcggaagtggttcctgaaccaacagagcagact
gtcagcgggaatgtgactgatgaatttgaagacgagaaacatggaaaagtggaaattgaa
gagagctctgagtctatgaagctggtggaggcgagtacccttgattctgtagtccctgac
gatttcagcgagtatgagcaaacggctgaaaatggcaatttggtggaaaccgacaaaatt
gagaataaaaatgtggttgtctatgagggaaatgcaaatgaccaaactggagatgatgat
tatatgcaatcagctcaaggtatggatccagctggatctgtttccgaggaaagttttgat
gatgaccaggaagctgacaggtccgtcgaagagcaagtggaatctgagagtttaattgat
aaggtgattgaggagaggatggagcagctggagatcggcaggaaggctgagaagaataca
gagaagaagcagaaggtgtcaatgaaaccgttggagtgggcagaggagcttgagaagagg
caggcctcgtttggtcaacactgggaagaaggagcagctgcgcaacccatgcaattagag
gggattggaaagggcccaccagctattggttatatgcaaattgagatggacaacccagta
actcgtgccatgtcctccccgtcatttaggccggaccatggttctccccaggtgctggca
gttcataggagctatatagcgatgggtacgtctaaaggtgctgtcattgtcattccaagc
aaatactccattcatcaagctgatgatacagacgcaaagatgctgttcttttggaaccaa
ggtgagaagactcaatcaccagtgactgccatgtgctttaaccagcaaggggatcttcta
ctagtaggatatgccgatggtcatatgacaatttgggacgtacagaaaggtacagcagca
aaagtcatatatggtgagcatatggcaccagtagtgcatgtttgttttatccgccaatct
aaggccatcactggggattcaaaaggggtagttctattgcacacattttccattatccca
gtaattaaccgtttgactgtaaagggcacccagcgactttttgatggaaatactggaatt
gtgctctcagcctgtcctcttctagtggatgaatcctttggttttagcaactcatctgcc
caggcaaaccaaacaacttcctccagtggtagtggtcttggaagcatgatgggtggtgtt
gttggaggtgtagttggagtagattctggatggaagtttttcaacgaaagctcctctaca
gtggaggatggtgttgtggtcatgtttattatgtatcagcatgctcttgtggttagactc
cgtaccaatattgaccatgttgaccatattgagaccttctctagaccagatggagcacga
gagggctccatcgcttatgctgcatggaagtacacatcatccttcagtgattcatcatca
ttagatgaagaacgagtatcatggcttgcacttgcatgggaccgtcaagtgcaagtggca
aaatttgttaaatcaaagatagttaaacacaaggaatggaagcttgatagtgcagctatt
ggtgttgcctggttagatgaccagatgttagttgtccttaatgtgagaggacagctctgt
ttgttctctaaagatggcagtgagcttcgcagaactacctttgttccggatggccttctg
tttgatgacactatattgcaccatgcacatttttctaacaagtttggtaacccagagagg
cattttaacagttcagtagcagtaagaggtgctacagtgtatatccttgggccaaccttt
ctcacagtttcacggcttcttccatggaaagaacgaattgaagcactaaagagagctggc
gattggatgggtgcactggacatggcaatgaggctttatgatggtcagacacagggtgtt
gttgatctcccgagaacagttgattcaattagagaagccataatgccttacttagtagag
ttgcttctatcatatataagctatgtcttcgaatatatctcgatttcattgtcaagtcat
actggaaaggggggagagacagatgctctaattgaggctgatagatccctgctgacacaa
agagaggaacaatatgctcgtgtaggaggggttgcagttgagtattgtgtccacattggg
cgcaacgacatcctttttgatacagtattctctaagtttgttgctgcacaaagtggaggc
atgtttctggaggtactagagccctatatattgaaggatatgcttggttctctcccccct
gagattatgcaagcactagtggagcactatagcggcaaaggatggttgcagcgagttgaa
caatgcattcttcacatggatatttcttcattggattttaatcaggtagtcagactgtgt
cgtgaacacgggctatatggtgcactaatttatttatttaaccaaggtctgaatgatttc
cgtacacctctagaggaacttttatcagtcattcagaatagcaacagaaaagatgctgct
tctactggatacaggatgcttgtttatctgaaatattgctttcagggtctggcatttccc
ccagggcatgggataattccccgatcccgccttcattcagtgagggaagaacttctgcaa
tttctgcttgaagaatccaagtcacttacttctgaagtatttaagggttttagtgcttct
tgtgggaagtgcccaaacatatgctatcttctttggatggatacagaagctaccttggaa
gttctcaaatgtgcttttgcacaagacagcattgaacctagagatgaactttctggtact
gccaacgcacctgcctcagaggatgaagatggcattgtcgctggaaacccagggagtcaa
aataatatggtacaaaatgtaatggatgctatcgttgacattgttggtttggaaaatgag
gtgattcggtctgttgttatgggtacagctgactcagaattttggccttcagagaaggaa
tttggttatttaatcgagtttgtgtccttttttgtttcccacaaaagggctattgcatct
aaaagagttgttatgcatattctcacttatctcacttcgtcttatgatgacacaagaaca
aggactcagaaagaaaaagaagttattcaactcttcaatgcagttccccaaaatgactgg
aattctgattttgtcttggacctctgttcagatgctcattttcatcaggcctgtggcttg
atatttacgaccaggaatcagaatttagctgctctagatagttacatgaaggataaagag
gaaccattccatgcttttatcttcattgataaaaggttattcaaattggctgatgatgaa
gctttgtcatttcgtaccacagtaatatctcgttttcctgagttagtcaagctaagcagg
gaatgtgcatttgtcttagtcactgatcatttctgtgataaggtccagcaaatattagca
gagcttcagtctgatcgacacagcctctttcttttcttgaaaactgctattgaagtgcac
ttgtcaggaaaacttgacttcagtaagcttagtgtaagaaacaatcaaactgttgaactt
cagtactcttccactgaccttgaagattatcaccagaggttatcaaatatcaagttagac
cacaatcctgtttctattgacgatgagttagttgaactatatctggagcttttgtgtcag
tatgagagaaggtcggttctgaagtttctggagacttttgacagttacagattagaacgg
tgcttgcatctttgcctagattacggagttacagatgctgctgcatttttgcaagagagg
gttggtgatgttgggagtgcccttgcacttatcctggctggacttgatgagaaaatcagc
gtattcatctcttctgtggaaaatactttatctgatgttgcagcaaaaggtacctctgag
actgaaattgttctagaaatgaatgaggctcatccagttcttgatgcattacatgcctcc
attgggttgtgccaaagaaattcacaacgcttggacccagaggaatctcagtctctttgg
ttccaactgcttgactccttttcagagccactgaaaaaattgtatggaagcaacgatgta
aatgaaaaaagtgccaggtccaaggggagcgaagcaccaattgaacatctgaagggaaaa
gcactatcacagcgaataaagatttcagctaaacaaaggtgcctaaatgttctgcggaaa
atattttcacaatttgttggagaaataatagaggcaatggctgggtatatacccctacca
gcaatcatggcaaaacttttatccgataatgggaatcaagagtttggtgatttcaaactt
gtgatacacagaatgttatctatgtatctttacgaaaaaagaatactggaaacagcgaag
tcagtaattgaggacgactcgttttataccttgagcttattgaagagaggagtttgtcat
ggatttgctccacagacttttgtatgctgcatatgcaactgctcactttctaaagaaggt
gctatttcagccatacggttgttcagttgtgggcatgcaacacatcttcagtgtgagtct
gagcagagcaggtcatccagtcaggaatctaaagatggatgccctgtctgtctctcaacg
agtaatacacaagcccgaaacagatcgcatatggttgataatggactagtcaagttttct
gggactgaacaggaattgtcacatggcatccatcagactcatgaagtcgatcatgctgag
agatctcgcgggcttcaacatatgtcacggtatgaaatactgagtaatcttcagaaagag
cagaagtccttccatatagaaactgtacctccattgaaacttgcaccaccagctatatat
catgaaaagatacagaagaggaccacttcggtgggggaacctagcaaacatttagttaga
ggacaaaacccccggaaaatatggcaaatgaaggagcaaaagtcaagcgtattccgtgag
ttactcccatcactgacatcatag
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