Panicum virgatum (switchgrass): 120654518
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Entry
120654518 CDS
T07260
Name
(RefSeq) RNA-binding KH domain-containing protein PEPPER-like isoform X1
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120654518
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120654518
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_2
MOEP19
Motif
Other DBs
NCBI-GeneID:
120654518
NCBI-ProteinID:
XP_039788012
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Position
1N:2408965..2413680
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AA seq
495 aa
AA seq
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MAPPPEDEEAAIDAILEAGVDDEEEEDPEEVEPWIPSSDSEPDEDRPALEPPDPSPAAAE
AALQPARMAVKEEKGEGEEARPRWPGWPGASVFRLLVPADKVGGLIGRCGSTIKRLCDET
RARVRVIDAAHAAADRIALVSATEEVEAELSPAMNAAIKIFKHINGIEEINSDGTLSASA
PEICSVRLLVPAAQAVHLIGTQGVTIKSIQESTGATIRIIDEDELLSEVLDERIVKIYGA
SLKVHNALKSVLGLLRKFLVDHGVLHLFERKNQEVAQAQHTLKENQFIDTYHVAVNQDFW
LSDQRGFGPPIGSRPLCGHDPSFCDPYSSDVIHATDSLMTQLGHANPKGSRFLYGCDPSF
CDQYSPYLSQPIHKLITQTMKIPLPYAEEIIGERGENIEFVRSVSGAVVILEEIGDYPEE
VLIVIKGSPSQVQTAHQLLQEVLSGNREPPPLPPRICFRGAEAGPRVPSSPHAGAMLLNS
PPTTCHCNKPGALRR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccgccggaggacgaggaggctgcgatcgatgccattctggaagctggcgtt
gatgatgaggaggaggaggatccggaggaggtggagccgtggatcccatcctccgactcg
gagccggacgaggaccgcccggcgctcgagccgccggacccttcccccgccgcggccgag
gcagcgctacagccggcgcggatggcggtgaaggaggagaagggcgagggggaggaggcg
aggccgcggtggcccgggtggcccggcgcgagcgtgttccggctgctggtgcccgcggac
aaggtcggcggcctcatcggtcgctgcggtagcactatcaagcgcctctgcgacgagacc
cgcgcccgcgtccgcgtcatcgacgccgcgcacgccgccgccgaccggattgctttagta
tctgcaacagaagaagttgaagcagagctatcacctgcgatgaatgctgcgattaagatc
ttcaagcatataaacggcatagaagagatcaattctgatggaactttatctgcttctgca
ccagaaatttgttctgttagattattggttccagctgcacaagctgtccacttaattggc
acgcaaggagttacaattaagtcaatccaagaaagtactggtgctactataaggattata
gatgaagatgagctattgagtgaggtactggatgaaagaattgtgaagatatatggtgct
tctctcaaggttcacaatgccctaaaatcagtgcttggacttctccgtaagttcctagtt
gatcatggtgtgcttcatctatttgaaaggaagaaccaagaagttgctcaggcacagcat
actttgaaagaaaatcaatttattgatacttatcatgttgcagtgaaccaggatttttgg
ctatctgatcagcgaggttttggtcccccaataggcagtagaccattgtgtggacatgat
ccatctttctgtgacccttactcatcagatgtcatccatgcaactgattccttgatgaca
cagctgggtcatgctaatccaaaaggcagtagattcttatatggatgcgatccatccttt
tgtgatcagtactcaccatatctcagccaaccaatccataagttaataacacagacaatg
aagatcccgctgccctatgctgaagagataattggcgagaggggagaaaacattgaattt
gtccgatctgttagtggagcagttgtgattcttgaggaaattggagattatccagaagag
gttctaattgtgatcaaaggcagtccttcacaagttcaaactgcgcatcaacttttacag
gaggttctttcaggcaacagggagcctccaccgctgccaccgaggatttgtttccgcggc
gctgaagctggcccacgggtgccgagctcccctcatgctggcgcgatgctgctgaactcc
ccccctaccacatgccattgcaacaagccgggggcactacgaagatga
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