Panicum virgatum (switchgrass): 120654542
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Entry
120654542 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT2-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120654542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120654542
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120654542
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120654542
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
zf-RING_6
Zn_ribbon_6
zf-RING_5
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
120654542
NCBI-ProteinID:
XP_039788044
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All DBs
Position
1N:complement(2630859..2634642)
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AA seq
316 aa
AA seq
DB search
MKGAFTMAPGSSIVTVVPESDCGDDGLSEALGGIRLDVDSTSKPWSTSLASVALSSLAGL
NDLLECPVCTNSMRPPILQCPNGHTICSSCKHRVENHCPTCRQELGNIRCLVLEKVAEQL
QLPCKYQSMGCTEIHPYKNKLKHEELCRVRPYNCPYAGSECLITGDVPFLVSHLINDHKV
DLHEGCTFNHRYVKPNPYKVENATWMLTVFKCFGQHFCLHFEAFLLGMAPVYMAFLRFMG
EESEAQCFGYSLEVGWGRRKLTWQGTPRSIRDSHRKVQDSSDRLIIHWNMALFFSGGSRQ
EHKLRVTGRIWREQGQ
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggagcctttacaatggcaccgggaagcagcattgtgactgtggttcccgagtca
gactgtggagatgatggcctttctgaggcacttgggggtattaggcttgatgtagactct
acaagtaaaccatggtctacgtcactagccagtgttgcattatcatcactggctggcttg
aatgatttgctcgaatgcccagtatgtacaaactcaatgcgtccacctatactacagtgc
ccaaatggccacacaatttgctccagctgcaagcatagggtagagaaccattgcccaact
tgccgccaagaactgggaaacatcagatgtttggttcttgagaaggtggcagaacaactt
cagcttccatgcaaataccaaagcatgggatgcactgaaattcacccgtacaagaacaaa
ctcaagcatgaggagctctgcagggtcaggccatacaactgtccgtacgcaggttcagag
tgtctgatcacaggtgatgttccgtttctggtgtctcatctcatcaatgaccataaggtg
gacctgcatgagggatgcacgtttaaccaccggtatgtgaagcccaatccttacaaagtg
gaaaatgctacatggatgctcacagtcttcaagtgtttcgggcagcacttctgcctgcac
tttgaggcattcctgcttgggatggcgccggtgtacatggcgttcctgcggttcatgggc
gaggagagcgaggcgcagtgctttgggtacagcctggaggtgggctggggcaggcggaag
ctgacatggcagggcacgccgcggagcatcagggacagccaccggaaggtgcaggacagc
tctgataggctgatcatccactggaacatggcgcttttcttctctggtggcagcaggcag
gagcacaagctgcgggtcaccggccgcatctggagggagcaagggcaatga
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