Panicum virgatum (switchgrass): 120654563
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Entry
120654563 CDS
T07260
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120654563
03420 Nucleotide excision repair
120654563
03430 Mismatch repair
120654563
03440 Homologous recombination
120654563
03460 Fanconi anemia pathway
120654563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120654563
03032 DNA replication proteins [BR:
pvir03032
]
120654563
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120654563
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120654563
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120654563
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120654563
MMR (mismatch excision repair)
120654563
DSBR (double strand breaks repair)
HR (homologous recombination)
120654563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
120654563
NCBI-ProteinID:
XP_039788067
LinkDB
All DBs
Position
1K:31667176..31676145
Genome browser
AA seq
838 aa
AA seq
DB search
MEAAAQLTPGGVRTIADGAMPAEIQPVLQVLEVRQVRSPKSAGAASANPNLSERYLVMLS
DGVNTHQSMLTTAFSPAVRDGALRVGTVVQLNEFICNTIQGKRIIIVLKLEILQTECAII
GSPKNYVAQSLEKVQDPDLSAIAAQKNSGIYSGVPGMQGSSVAPRVEQASNNLSYGVPHN
GAQGIGLTVEPDHNNGQILVPDHNNMFTGGFYGTVSALNTVNASMVEPRSQEPSLRSHHN
QQFAASDTGEAFTSPGNTYKHPEQPSYQQPPPVYINRAPVARNESTSHVVPIMALNLYQT
RWTIKARVTAKTDVKHWNNANGTGKLFSFDLLDGEGGEIRAICFKEAVDQFYDLIEVDKV
YLISRGAVRHAQKQFNALNNDHEIILDASTSHVEICSNDDYSIPRVQYNFRQISEIENMD
NQIVVDLLGVVTSAKHPLAEAQKRTLQLRDMSGRSVEVTLWGNFFDIEGQQLQLQCDSGL
NPILALIGARISNFNGRSVSTISSTQLKIDPDFPDAERLRRWYILTEGNNTACVSLSREQ
FNSVQADRKTIAQIREENLGRDKTDWVTVKAAISHVYSDSFCYPACPLIFNEKPCNKKVI
ESGDGMWFCEKCDKSFGNCEYRYAVKFQIQDHTGTICVTAFQEAGEQIFGCTAQELRTAR
NIDQDDAPFTEIIEGARWHLNLFKLSVREESFNDEPLMQCKLVNAEKLDPSKESSILSKT
IDSLLQGRSGPRPGDQGNIAVNTGFCNSPGGHNVLTSSNVCGMNMGGINQFGQQGSIGCE
MSTPSTGMDRQQQLGSGGFIGNNHGSAGSKVRSDMCFKCNKPVHYFRDCLEKAIASQH
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgcggcgcagctgacgcctggcggggtgaggacgatcgcggacggggcgatg
ccggcggagatccagccggtgctgcaggtgctcgaggtgcgccaggtccgctcccccaag
agcgccggcgccgccagcgccaaccccaacctctcggagcgttacctcgtgatgctctcc
gacggcgtcaacacgcatcagtccatgctcaccaccgcattcagccctgccgtcagggac
ggcgccctccgggtgggcaccgtcgtccagctcaacgagttcatttgcaacaccatccag
ggtaaaaggatcatcattgttttgaaacttgaaattctgcaaactgaatgtgccataatt
gggagccccaaaaactatgtagcacaaagtctagagaaggtacaagatcccgacttatcg
gccattgctgctcaaaagaacagtggaatctattccggtgtcccaggcatgcagggttct
tctgttgctccaagggtagagcaggcttctaacaatctatcatatggtgtaccccataat
ggtgctcaaggcattggcctgacagtagaacctgatcataacaatggccagattctagta
cctgatcataacaatatgttcactggaggcttttatggtacagtatcagcactaaacact
gtaaatgcaagtatggtggaaccacggtctcaggagccttcactgagatctcatcacaac
caacaatttgctgccagtgacaccggtgaggccttcacctctcctggcaacacatacaag
cacccagaacagccttcatatcagcagccacctccagtgtatatcaatagagcccctgtt
gctaggaatgaatcaacatcccatgttgtcccaattatggcattgaatctgtaccagact
aggtggacaattaaggctcgggtgactgctaagactgatgtcaagcattggaacaatgcc
aatggtacaggaaaacttttctcatttgatctccttgatggagaaggtggggaaattcgc
gcaatttgcttcaaagaagcagttgatcagttttatgacctgattgaggttgataaggtg
tacttgatatcaagaggagctgtgagacatgcacagaagcagtttaatgctttgaataat
gatcatgaaattattctggacgcttcaacctcacatgtagagatttgttctaatgatgat
tacagcattcctagagtgcagtacaatttccggcagatcagtgaaatagagaacatggat
aatcaaatcgtggtagatttacttggtgttgttacatcagctaagcaccctttggctgaa
gcccagaaaagaacccttcaactcagggacatgtctggtaggagtgtggaagtgacctta
tggggcaacttctttgatattgaaggtcagcagctgcagttgcagtgtgattctggtttg
aatcctatacttgctttgataggtgcccgcatcagtaattttaacggcagatcggttagt
acaatcagttcaacccagttaaaaatagacccagactttcctgatgctgaaaggctgagg
cggtggtacatactaactgaaggaaataacactgcttgtgtttcactatcccgggaacaa
tttaattcagtccaggctgaccgcaaaacaattgcacaaatcagggaagaaaacttggga
cgcgataagacagactgggtcactgttaaggctgcaatctcacatgtatatagtgacagt
ttttgttatccagcatgccccttgatttttaatgagaagccatgcaacaaaaaggtcata
gaaagtggtgatgggatgtggttttgtgagaaatgtgataagagttttggaaactgtgag
tacaggtacgcggttaagtttcaaatccaagatcacactggcacaatctgtgttaccgca
ttccaggaggctggtgaacagatatttggctgcacagcacaagaacttcgcacagcaaga
aatattgaccaggatgatgccccattcacagagatcatagaaggggcccgttggcatcta
aatctattcaagttgagtgtcagagaggaaagcttcaatgatgagccacttatgcaatgt
aaacttgttaatgctgaaaaattggacccatccaaagagagcagcatcctttctaaaacc
attgacagccttttacagggcagatcaggcccaagaccaggagaccaaggcaacatagct
gtaaacactggcttctgcaattcgccaggtggtcacaatgtgcttacatccagtaatgtc
tgtggcatgaatatgggtggcataaatcagtttgggcagcaaggaagcataggctgcgag
atgtctactccatcgacaggtatggataggcagcaacaactgggaagtggaggcttcata
ggcaacaaccatggctctgctggtagcaaggttagatcggatatgtgtttcaagtgtaat
aagcctgtgcactattttagagactgcctagagaaggctattgcctcccagcactag
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