Panicum virgatum (switchgrass): 120654747
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Entry
120654747 CDS
T07260
Name
(RefSeq) SUPPRESSOR OF ABI3-5-like isoform X1
KO
K13094
RNA-binding protein 5/10
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120654747
Spliceosome [BR:
pvir03041
]
Complex A
Other components
Complex A specific factors
120654747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
OCRE
G-patch
Zn_ribbon_RanBP
G-patch_2
DUF3008
Motif
Other DBs
NCBI-GeneID:
120654747
NCBI-ProteinID:
XP_039788312
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All DBs
Position
1N:complement(4951938..4967091)
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AA seq
1041 aa
AA seq
DB search
MDHGRYAPHHGWENNSAPDGYGVINEPDYRADGSYNGRRPVGEGFSRDSYGRGAYYQDVH
DRNMYPPPASVGAMWSQPRRNHEEEYATARDHRRHDTDYRNDGKHHEFDSYRGVDKLRDN
YHAADNYYESGSHRDFGVDRSKRIGSRERAEFHGEFEDRYRSSHQSREDSYERDHEYGRH
SYDSDYERGRRDSSWRRRDSCEDEHERRGLSRERNESPYMRHSRSRSRGRDDRSRSRSRS
RSPRARSRGRNQRDGFYDDNCFDRRREYDSDERRRGDSVAPSATVVVKGLSLKTNDDDLY
QILAQWGPLRSVRVIKERNSGMSRGFAFIDFHTVEAARRMMEGTAENGLEIDGRNVFFEY
SSRPTGGMGGPSLGQENFTRPTYGHRTAAAPCDWICTICGCMNFARRTSCFQCNEPRTED
ALPADATGSTPQFGRRGSELGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDIRLVRDKF
THVSRGFAFVHFHSVEDATKALEATNGITLEKNGQVLRVAYAKSTHGPASGGSQSNSLAA
AAIEAASFAQQYDAIGWAPKEYNPDEKQNSNSETQKDVSAAQSGFVWDEKSGYYYDSASG
FYYDGNTGLYYDSNSGVWYSYDQQTQQYVPCDQNNTKAAGVVANENTKTSESNSGKKVVI
SAPAATIKQSEKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIANKKKMNNVLA
MWKQRNQEGQAGRIVLDDKEPSRSDDKSIHSHSGTGFSLKSKPNSDSENAKDMNSSASYN
SFGQGTASAQMLDSDVKPRPVSNSLGTTVMGVIRGSARGVIKSDTTFHALSDTGSAEPRT
TVTTSTKGLMTTPEALATPAPFKTDISALISNTSSGVSGSGKRRFSEAPAQSQYRDRAAE
RRNLYGSSLGNDSVGLDSTGDYPSRKGSSELGSMPFPPGVGERSSGEISNTENYEVITAE
RAIDESNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKSVDVRAGLGSQQRKADPSLEAQ
AGDSYKTIIQKKAIARFREMS
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggatcatgggcgctatgctccacatcatggatgggagaacaacagtgcaccggatggt
tatggtgtaatcaatgagccagattatagggctgatgggtcctataatggtaggaggcct
gtgggtgaaggcttttctagagattcatatggaaggggtgcatactatcaggatgtacat
gatagaaatatgtatccaccaccagcctctgttggtgctatgtggtctcagcctcggagg
aatcatgaagaggaatatgcaactgccagagatcacagaaggcatgacactgattatcgc
aatgatggaaagcatcatgagtttgattcgtacagaggagttgataaactccgtgataac
tatcatgctgctgacaactactatgaatctggcagtcaccgtgattttggtgttgatagg
agcaaaaggattggaagcagagaacgtgcggagtttcatggtgagtttgaagaccgctac
cgcagctctcaccaaagcagagaggacagctatgagagagatcatgaatacgggcgtcac
agctatgattcggactatgagagaggcaggagagatagtagctggagaagacgcgattca
tgtgaggatgaacatgaaagaagaggtttaagccgtgaaagaaatgaaagtccatatatg
cgccatagccgttctaggtcacgtggccgtgatgaccgatcaagatcacggtctagatca
agatctcctcgtgcgagaagtcgtggtcggaaccaaagagatggcttttatgatgataac
tgctttgacagaagaagggaatatgactcggatgaaaggaggcgtggtgattcagtggct
ccatctgccactgttgttgtcaagggattgtccctcaagactaatgatgatgacctatat
cagattcttgctcagtggggccctctacgcagtgtgcgtgtgatcaaggaacgaaattct
ggcatgtctcggggattcgcttttattgacttccatactgtggaagctgctcgtagaatg
atggaaggtacggcagagaatggccttgaaatcgatggtaggaatgtgttctttgagtac
agtagtagaccaactggtgggatgggtgggccttctcttggacaagaaaattttacaaga
cctacatatgggcacaggactgctgctgcaccatgtgactggatttgtactatatgtgga
tgtatgaattttgcccgccggacctcctgttttcagtgcaatgagcctcgtactgaggat
gctctaccagctgatgcgacaggttccactccacagtttgggagaaggggatctgaacta
ggtccaactcatgttttagttgttcgtggcctggatgaaaatgctgatgaagaaatgctt
cgctacgaattttctaagcacgcaccaataaaggatatccgccttgttcgagacaagttt
actcatgtctctagaggttttgccttcgtccatttccattcagtggaagatgctacgaaa
gctcttgaagctacaaatgggattacactggagaaaaatggtcaggttttgcgtgtagca
tacgctaaaagtacacatggacctgcatcagggggttcacagtcaaacagccttgccgca
gctgccattgaggctgcatcatttgctcagcagtatgatgccataggttgggctcccaaa
gagtacaatcctgatgaaaaacagaatagcaactcggaaactcaaaaggatgtttctgca
gcacagtcaggattcgtttgggatgaaaaatctggttactactatgattctgcctctgga
ttctattatgatggaaatactggcctttactacgacagtaattctggagtttggtattcg
tatgatcaacaaactcagcagtatgtcccttgtgaccaaaacaatactaaggcagctggg
gttgtggccaatgaaaatacaaagacctcagaaagtaatagtggcaaaaaggtcgtgatt
tctgcacctgctgccacaattaaacagagcgagaaaacttcgcttcctgatgctgttcaa
gctgctgcaaatgcagcactggctgcagaaaagagagagaaggagaaggcgaaagagatc
aagttggcctcaaaaagtagtctgatagctaacaagaagaagatgaacaatgtcctagct
atgtggaagcaaaggaatcaagaaggacaggctggacgaattgtccttgacgacaaagaa
ccatcacgctctgatgataaatctatccattcacacagtggaactggattctctttgaaa
agtaagcctaattctgactctgaaaatgctaaagatatgaactcatctgcaagctataat
tcctttggtcaaggaactgcatcagcacaaatgctggattcggatgtaaagcctagacct
gtcagtaacagtttgggaactacagttatgggtgttataagaggttctgctagaggagtg
atcaagtcggatactacgtttcatgcattatctgatactgggagtgccgagccccgcacc
actgttaccacaagcacaaaaggcttaatgacaactcctgaggcacttgcaactcctgca
cccttcaaaacagatatatctgccttaatctctaatacttcatctggagtttctgggagt
ggtaaacgtcggttttctgaggcaccagcgcaatcccagtacagagaccgtgctgcagaa
agacgaaatctctatggatcatcgcttggcaatgacagtgttggactggattcaactggt
gactatccgtcccgaaagggttcaagtgagctagggtcaatgccatttcctcctggtgtg
ggtgaacgttctagcggtgagattagcaacactgaaaactatgaagttatcactgcggaa
agagcaattgacgaaagcaatgtgggcaaccgtattctacgcaacatggggtggcaggag
ggtctgggattgggaaaggatggtagtggtatcaaggaaccagtccaggcaaaatctgtg
gatgtgagggctgggctcggaagtcagcagcggaaagctgatccatcgctggaggcccaa
gctggggacagctacaaaaccatcatccagaagaaggctattgcaagattcagggagatg
tcctag
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