KEGG   Panicum virgatum (switchgrass): 120654957
Entry
120654957         CDS       T07260                                 
Name
(RefSeq) SKP1-like protein 1A
  KO
K03094  S-phase kinase-associated protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120654957
   04120 Ubiquitin mediated proteolysis
    120654957
  09126 Chromosome
   03083 Polycomb repressive complex
    120654957
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120654957
   04121 Ubiquitin system [BR:pvir04121]
    120654957
   03036 Chromosome and associated proteins [BR:pvir03036]
    120654957
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    120654957
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     120654957
   Cul7 complex
     120654957
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120654957
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     120654957
SSDB
Motif
Pfam: Skp1 Skp1_POZ SNF2_assoc Myb_DNA-bind_4
Other DBs
NCBI-GeneID: 120654957
NCBI-ProteinID: XP_039788578
LinkDB
Position
1K:complement(37451782..37452294)
AA seq 170 aa
MASADEKKVRLRSKDGEVFDVQEKAIGAFSVTITGMIDEGRTDHDGVVELPNVSAATLSR
VLEYVVRHFDADDSYPSSSFNPSDDDPLARFDEDLVSVDNDSLFDLLEAANFLNIVKLLD
LTCKAVAEQMRGRTADEIREKFHIVNDYTKEEEDVRRENSWAFDETMDYS
NT seq 513 nt   +upstreamnt  +downstreamnt
atggcgtccgccgatgagaagaaagttcgcctccgcagcaaggacggcgaggtcttcgac
gttcaggagaaggccatcggcgccttctcggtcacgatcacgggcatgatcgacgagggg
cgtactgaccacgacggcgtcgtcgagctcccgaacgtctccgccgccacgctctcccgc
gtcctcgagtacgtcgtgaggcacttcgacgccgacgactcctacccctcctcctctttc
aaccccagcgacgacgaccccctcgcccgcttcgacgaggacctcgtcagcgttgacaac
gacagcctcttcgacctcttggaggcggccaacttcctcaacatcgtcaagctgctggac
ctgacgtgcaaggcggtggcggagcagatgagagggaggacggccgacgagatccgcgag
aagttccacatcgtcaacgactacaccaaggaggaggaggatgtccgcagggagaactcg
tgggcgttcgatgaaaccatggactatagttaa

DBGET integrated database retrieval system