Panicum virgatum (switchgrass): 120655086
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Entry
120655086 CDS
T07260
Name
(RefSeq) nuclear ribonuclease Z-like
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120655086
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
120655086
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
120655086
Prokaryotic type
120655086
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Ortholog
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GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
PDEase_II
Motif
Other DBs
NCBI-GeneID:
120655086
NCBI-ProteinID:
XP_039788748
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Position
1N:10081307..10085305
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AA seq
305 aa
AA seq
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MANGGKLAIAADDDSGAPSTSAPARPRAMQRLEIEGYAVEGVSIAGHETCVMFPSLNLAF
DIGRCPPFAISQDLLFISHAHMDHIGGLPLYVATRGRRRMRPPTVFVPACLADLVRRLFE
VHRAMDQSDLDHKLVPLEVGEGYELRKDLRVRSFRTYHVVPSQGYVVYKLKHKLKDEYVG
LPGKELSSLRKSGVEITNTVSTPEIAFTGDTMSDFILDPDNADVLKAKILVVESTYIDDS
KSIEDAREKGHTHLSEIASLSDKLENKAILLNHFSSRYTAEDIDAAINRLPPSLQSRVHA
LKEDF
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggctaatggcggcaagctagcgatcgccgccgatgacgactcaggggcgccctcaacc
tccgctcctgcgcggccgagggcgatgcagcggcttgagattgagggctacgccgtggag
ggcgtctcgatcgcggggcatgagacctgcgtcatgttcccctccctcaacctcgccttt
gacatcggccgctgcccgccgttcgccatctcgcaagacctcctctttatctctcacgcc
cacatggaccacattgggggccttcccctgtacgttgccacgcggggtcgcagaaggatg
cgcccgcccaccgtcttcgtccccgcctgccttgccgacctcgtgcggaggctattcgag
gtccaccgtgccatggaccagtctgacctcgaccacaagctcgtgccgcttgaggtcggg
gagggctatgagctccgcaaggacctcagggtcaggtcgttcaggacctaccacgtcgtt
ccaagccaggggtatgtggtatacaagctgaagcataagctcaaggacgagtatgttggc
ctcccagggaaagaactcagcagtctcagaaagtcaggagttgagatcacgaatacagtg
tcgacacctgagattgctttcacgggagatacaatgtcggatttcatccttgatcctgat
aatgcagatgttttgaaggcgaaaattcttgtggttgagagtacttatattgatgactcg
aaatcaattgaggatgcaagagaaaaagggcacactcacttgtctgagatagcgagtctg
tctgacaagcttgaaaacaaagctattctgctgaatcacttttcaagccgttatactgca
gaggacattgatgcagcaatcaacagattgccaccatctctccaaagcagagttcatgca
ttgaaggaagacttctag
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