Panicum virgatum (switchgrass): 120655103
Help
Entry
120655103 CDS
T07260
Name
(RefSeq) 25S rRNA (cytosine-C(5))-methyltransferase NSUN5-like
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120655103
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
120655103
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Other ribosome biogenesis factors
120655103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
NSUN5_N
NSUN5_fdxn-like
Ubie_methyltran
FtsJ
RsmF-B_ferredox
Methyltransf_31
PCMT
Methyltransf_4
ASPP2-like_RA
Motif
Other DBs
NCBI-GeneID:
120655103
NCBI-ProteinID:
XP_039788760
LinkDB
All DBs
Position
1N:10687919..10694826
Genome browser
AA seq
516 aa
AA seq
DB search
MAPPPQHPKNRRRGPAATGGNGRPPRRMASRDAAERAAYFARREAAAVLRRVLRGDATRR
AAGSIKSLVYSPTVRNKRATFALVCQTLKYLPILKEVLGSSGVLNSKWKRQEELVLVTAY
DILFGQGIAVSGSVEQLIMTHKDTLSSALDRICAKKKVRSVEDLLGNKTAVKPKPRFLRV
NTLKTTTESVVEELSKIHMVTKDDMVPDMLVLPPGTDLHSHPLVANGKVFLQGKASCMVA
VTLCPKPGWKVIDACAAPGNKTVHLAALMNGQGGIIACELNKERAKTLQNTIRRSGANNI
QTVNGDFLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDYLLPSHSRDDQDDASTSSRV
LKLSAFQKIALSHALSFPSVERVVYSTCSIHQAENEDVVNAVLPLATSLGFELATPFPQW
HRRGLPVFEGSEHLLRTDPEDGLEGFFISLFVRKAAGGDAEEPNEDATLEARRKEPNEDV
AVVAQRKQARRRRSRVRAFSSLRLSRMILCSNWGFR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggccccgccgccgcagcatcctaagaatcgtcgccgcggcccagcggcgacaggaggg
aacgggcgtcccccgcgccggatggcgagccgggacgcggcggagcgcgccgcgtacttc
gctcggcgcgaggccgcggcggtgctccggcgcgtgctccgcggggacgccaccaggcgc
gccgcgggctccatcaagtccctcgtctactcccccaccgtccgcaacaaacgcgccacc
ttcgcactcgtctgccagaccctcaagtatcttcctattcttaaggaggttttaggatcg
agtggagtactaaacagcaagtggaagagacaggaggaattagtccttgtgactgcctat
gacatcctctttggtcagggaattgcagtttctggatcagttgagcagttaattatgaca
cacaaagacactcttagtagtgctcttgatagaatttgtgccaaaaagaaagtcaggagt
gttgaagacttgctaggcaataaaacagcagtcaaaccaaagcccaggtttcttcgtgtc
aacacactcaagaccactaccgagtctgtggttgaagaattgagcaaaatacacatggtc
actaaagacgatatggttccagatatgttggttctcccgcctggaactgatttgcacagc
catccattggttgcaaatggaaaagtgtttttgcagggcaaagctagttgtatggtagcg
gttacactgtgccctaagccaggttggaaggttattgatgcgtgcgcggctccagggaac
aaaacagtccaccttgctgccctcatgaatggacaggggggtattatagcttgtgaactt
aacaaagaaagggccaagacactgcaaaatactatcagaagatctggagcaaataatatt
caaacagtgaatggtgattttctggatatagatagcaacgatccatcatatgccgaggtc
cgtgctattctgttggacccctcttgctctggttctggaatatctacagagagacttgac
tacttgcttccttcacattctagagatgatcaggatgatgcgagtacgagctcaagggtc
ctgaagctctctgctttccagaagatagctctctcacatgctctatcatttccctcagtg
gagagggtggtctacagcacctgctcgatccaccaggcagagaatgaggatgtcgtgaac
gccgtcctacccttagccacatcacttgggttcgaacttgctactccatttccccaatgg
caccgccgtggccttccggtctttgaaggatctgaacatctgcttcgaacggaccctgag
gatggcctcgagggcttcttcatttcattgtttgtcagaaaagcagcgggtggtgatgca
gaagaacctaatgaagatgctaccttggaagcacggaggaaagaacctaatgaagatgtt
gccgtggtagcgcaaagaaaacaagcgcgtagaaggcgaagcagggtcagggcgttcagt
tccttgaggctgtccaggatgatcctctgctccaactggggtttccggtga
DBGET
integrated database retrieval system
