KEGG   Panicum virgatum (switchgrass): 120655125
Entry
120655125         CDS       T07260                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A2 homolog 1-like isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120655125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120655125
   03041 Spliceosome [BR:pvir03041]
    120655125
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120655125
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120655125
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120655125
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_RdRP1_2
Other DBs
NCBI-GeneID: 120655125
NCBI-ProteinID: XP_039788777
LinkDB
Position
1N:complement(11014869..11019501)
AA seq 395 aa
MAGYPEDNQHALNGYEDEEVDEEEGHPGRRGGRDGGSGYGDAGGDDGRGAGGDSSGKIFV
GGVAWETTEETFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHVI
DGRTVEVKRTVPREEMTTKDGPKTRKIFIGGLPPSLTEDELKDHFSSYGKVVEDQIMLDH
STGRSRGFGFVTFESEDAVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSNGRSSHGG
GGGYRNSYRSGGAGSGSGGNSGGGGGGGGGGYGYGGAYRSAAAAGYGYDGGAGAGYGYGR
GYGYAGNAGFGSGFGGGYGGSMYGGAYGAYGAYGGGAYGGGAYGGGAYGGGAYGGGPGGY
GAGGYGGYGGAGGAGGAAGGSSGARSSSRYHPYGK
NT seq 1188 nt   +upstreamnt  +downstreamnt
atggcggggtacccggaggacaaccagcacgcgctgaacgggtacgaggatgaggaggtc
gacgaggaggagggccaccccgggaggcggggaggccgggacgggggctctgggtacggc
gacgccggcggagacgacgggaggggggccggcggcgactcgtcggggaagattttcgtc
ggaggcgttgcttgggagacgactgaagaaacattctccaagcattttgagaagtatggg
gcaataactgattctgtaattatgaaggacaagcatactaagatgcctcgtggatttgga
tttgttacattttctgatccatctgttatagacaaggttttggaggatgagcacgttata
gatggcagaacggttgaggtcaagaggacagtccctagggaagaaatgaccaccaaagat
ggccccaagacaagaaagatcttcattggtgggctaccaccatcactaactgaagatgag
ttgaaggatcacttttcctcttatggtaaggtggttgaagaccagataatgcttgatcat
agcactgggcgttctagagggtttggttttgtcacttttgaaagtgaggatgctgttgaa
agggtcatatcagaggggagaatgcgtgatcttggtgggaagcaggttgaaataaagaag
gctgaaccaaagaagcatggatctgatcacagtagtaatggtaggtctagccatgggggt
ggtggtggttaccgtaattcttaccgtagtggtggagctggcagcggcagcggtggcaac
agtggtggtggtggtggtggcggcggcggtggttatgggtacggtggtgcttataggtct
gctgctgcagcaggttatggatatgatggtggtgcaggagcgggatatggctatggcaga
gggtatggctatgcaggcaatgctggctttgggtctggttttggcggtgggtatggtggc
tccatgtacggaggcgcttatggtgcatatggtgcctatggtggtggtgcttatggaggg
ggtgcttacggaggtggtgcttatggaggtggcgcctatggtggtggcccaggtggctat
ggcgctggtggatatggtggctacgggggtgctggtggagcaggtggtgctgctggtggg
agttcgggtgctcggagttctagcaggtaccatccatatggaaaataa

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