Panicum virgatum (switchgrass): 120655295
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Entry
120655295 CDS
T07260
Name
(RefSeq) transcription factor SPEECHLESS-like
KO
K20558
transcription factor SPEECHLESS
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120655295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120655295
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120655295
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Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Motif
Other DBs
NCBI-GeneID:
120655295
NCBI-ProteinID:
XP_039788984
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Position
1N:complement(15320364..15324297)
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AA seq
392 aa
AA seq
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MGDGAMCELLVDDHSELRHQSSGAEDLFSILETWEECMAGSSAHAAAMPACSQSSTGGSE
SAGAMAGARPTANNRRRAGDEGNGVGRGAPAQKKQKGSSTAAAQDVAAADEGGAKMSHIA
VERNRRKQMNEHLAVLRSLMPCFYIKRGDQASIIGGVVDYIKELQQVLRSLEAKKHRKAC
AEQVLSPRPAMPAASPRPLLIKSTPPLSPRVAVPISPRTPTPGSPYKQPSGGGGGSGAAA
GSRPPHPAAAAYMMPSPAMTPTTSSSSSSYAHDQQQQQHYPTTQLYLPTLDSLVTELAAR
AAGGRPAAAGLTLPDVKVEFAGPNLVLKTVSRRAPWQALKIIAALESLSLEILHVSVSTL
DDTMVHSFTIKIGIECELSAEELVQEIQQTFL
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacggcgccatgtgcgagctcttggtcgacgaccacagcgagctccggcaccag
tcgtcgggtgccgaggatctgttcagcatcctcgagacgtgggaggagtgcatggccggc
agttctgcgcatgcggcggccatgccagcgtgtagccagagctcgaccggtggttctgag
tctgctggcgccatggcgggggctaggccgacggcgaacaaccggcggcgcgcgggcgat
gaggggaatggcgtcggccgtggcgctccggcgcagaagaagcagaagggttcgtcaacg
gcggcggcacaggatgtggcggccgccgatgaggggggcgcgaagatgtcgcacatcgcg
gtggagcgcaaccggaggaagcagatgaacgagcacctcgccgtgctgcgctcgctcatg
ccatgcttctacatcaagaggggagaccaagcgtccatcataggaggggtggtggactac
atcaaggagctgcagcaggtgctgcgctcgctggaggccaagaagcaccgcaaggcgtgc
gcagagcaggtgctcagcccgcggcccgccatgccggcggcgagcccgcggccgctcctg
atcaagtccacgccgccgctcagcccgcgcgtggcggtgccgataagcccacggacgccg
acgcccggcagcccctacaagcagccgtccggcggcggcggcggcagcggggctgccgct
ggaagcaggcccccgcaccccgccgcggcggcctacatgatgccgtcgccggccatgacg
ccgacgacgtcgtcgtcgtcgtcgtcctacgcgcacgatcagcagcagcaacagcactac
ccgacgacgcagttgtacctgccgaccctggacagcctcgtgaccgagctcgccgcgcgg
gccgccggcggcaggcccgcggcggccgggctcaccctccccgacgtgaaggtggagttc
gccgggcccaacctggtgctgaagacggtgtcgcgccgcgcgccgtggcaggcgctcaag
atcatcgccgcgctcgagagcctctcgctcgagatcctccacgtcagcgtcagcaccctc
gacgacaccatggtgcactcatttaccatcaagattgggatcgagtgcgagcttagcgcg
gaggagcttgtgcaggaaattcagcaaacgttcttgtga
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