Panicum virgatum (switchgrass): 120655351
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Entry
120655351 CDS
T07260
Name
(RefSeq) proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1
KO
K18213
proteinaceous RNase P [EC:
3.1.26.5
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120655351
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
120655351
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
120655351
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRORP
PPR_long
PPR_2
PPR_3
TPR_24
RNase_Zc3h12a
PPR
MSC6_N
Tas3_C-hel
PPR_1
Motif
Other DBs
NCBI-GeneID:
120655351
NCBI-ProteinID:
XP_039789043
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All DBs
Position
1N:complement(16572229..16591983)
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AA seq
736 aa
AA seq
DB search
MASLFATRSLPAHQRRHLLFTSSSSPPITSRRSLVPPPPCRGRARELLNVMPQRDDGRSP
IPRTEERRAGSARVRHGSNGGTVRGDTTTREAGPPVQRESSRGVPRPWKKGDRVFVEERT
DWVSHEKNWRRGPMATGEQEWRRDAKRLTRGRNGMWAKESENAGNSRDVGSGRRNMTKKK
KRSKGRELGGKLRVELDMCSKRGDVMGAISLYDSAVEDGIRLGQHHYNVLLYLCSSAALG
FVQPAKSGNTGSGITSIGPAQKLDSSPNRSLRGSEEEDASESHVQDEEKDKADLLPSDDL
NVQTAVIPVGDELREYARARGFEIFEKMCEERERIQMSEAALTAKARMALSIGNGDMAFE
IVKQMKDLGITPKLRSYGPALTAFCNTGNVEKAFEVEAHMLESGITPEEAELEMLLRVSV
VGRRGDKVYYLLHKFRAAVRQVSPSAAQLFEAWFSSPTASKVGKRKWDAGAIAKAIENNG
GGWHGFGWLGRGKWIVTRSNINKNGVCLACREKLTIIDLDPKETEQFATFVEKLAIKREK
NSNFEKFQRWLEKHGPFEAVVDAANVGLFSHKHISLSEVNAVADAIRQSFTSRKWPLIIL
HNRHLTGERMKKPGNHKLVEKWKQTNSIYATPNGSNDDWYWLYASIRCKCLIITNDEMRD
HTFQILKKDFFPKWKERHQVRFSYEDSSITFQMPPPYSVVIQESEKGHLHIPVSEEGLLE
EDRTWLCVTRRNSQAQ
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggcctccctcttcgccacgcgctccctgcccgctcaccagcggcgccacctcctcttc
acttcatcctcctcgcctcccatcacctcccgcaggtctctcgttcctccaccgccatgc
cgcggccgcgcccgcgagttgctcaacgtaatgccccagagagacgacggcaggtctcca
atcccaagaacggaggaacgcagagcaggctcggccagagtacggcatggctcaaacgga
ggaactgttcgaggagacaccacgacccgggaggcaggcccgccggtacagcgggaaagc
agccgtggcgtgccaaggccgtggaagaaaggggacagggttttcgtagaagaacgtacg
gactgggtctcccatgagaagaattggaggagaggcccgatggcgactggggagcaagaa
tggcgaagggatgcgaaacgcttgacaagaggcagaaatggaatgtgggcaaaagaatca
gaaaatgctggaaactcaagagatgtgggtagcggaagaagaaacatgaccaagaaaaag
aagagatcaaagggtcgtgagctgggaggcaagctgagagttgagctggacatgtgctcg
aagagaggagatgtgatgggagcaatctcactgtatgactctgcagttgaggatgggatc
agattgggccagcaccactacaatgtgctcctttacctgtgttcttctgctgctcttggt
tttgtccaaccagcaaagagtggcaataccggtagtggcatcactagtatcggtcctgca
cagaaacttgattcatcacccaacagaagcttgagaggttcagaggaggaggatgcatct
gaaagtcatgttcaagatgaggagaaagacaaggctgatctgttgccttcagatgattta
aatgtgcaaacagctgtcataccagtaggagatgagctcagagagtatgcacgcgcacga
gggtttgagatatttgagaagatgtgcgaagagagagagagaattcaaatgagtgaggct
gctctgactgcaaaggcacgtatggctttgtcaattggcaatggtgacatggcttttgag
attgtcaaacaaatgaaagaccttggtattacgccgaagctgcggtcatatggtcctgct
ttgacagcattttgcaataccggtaatgttgaaaaagcatttgaagtggaagcccatatg
ttggaatctggaatcacaccagaagaagctgagttggagatgcttctcagggttagtgtg
gttggccgacgcggagacaaggtgtattatttgctgcataagtttagggctgctgtcaga
caggtatctccttccgcagctcaattatttgaggcttggtttagtagcccaacagcatct
aaagttgggaagagaaagtgggatgcaggtgctatagcaaaggctattgagaataatgga
gggggttggcacgggtttggttggctagggagaggaaaatggattgtaacacgctcgaac
atcaacaagaatggtgtctgccttgcttgcagagagaagctgacgattatagatcttgac
ccaaaagaaacggaacagtttgccacatttgtggaaaaattagctatcaagagagagaag
aactcgaattttgagaaattccagagatggcttgaaaagcatggaccttttgaagcagtc
gtggatgccgccaatgttggcctttttagccataaacatatttccttgagtgaggttaat
gctgttgctgatgctataaggcaaagttttacgtcaagaaagtggcctttgataatttta
cataacaggcatctcactggagaacgtatgaagaaacctggtaatcacaaattggtagag
aaatggaagcaaacaaattctatctatgcaacccctaatggctcaaatgatgattggtac
tggctatatgcttctatcagatgcaaatgcttgatcattaccaatgatgaaatgagagat
cacacgtttcagatattgaaaaaggatttcttccccaaatggaaggaaaggcatcaggta
cgcttcagttatgaagacagctccatcacatttcaaatgccacctccatactcagttgta
attcaggaatctgagaaaggccatctgcatatccctgtctcagaggaaggattgctagag
gaggaccgaacctggctatgtgttacgcggcgcaattcccaggcacaataa
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