Panicum virgatum (switchgrass): 120655480
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Entry
120655480 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120655480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120655480
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120655480
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120655480
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
Motif
Other DBs
NCBI-GeneID:
120655480
NCBI-ProteinID:
XP_039789249
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All DBs
Position
1N:complement(20373732..20377368)
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AA seq
350 aa
AA seq
DB search
MELDSIECVSYSDGMEGDDDAAAVTSAQLPRPFLKSASSAGSAAAAAVNVVVASDRAGAA
GPGGAGLGAGAGPLVISPATGVHELLECPVCTNSMYPPIHQCQNGHTLCSTCKTRVHNRC
PTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEVFPYYSKLKHESQCNFRPYNCPYAG
SECSVLGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFC
LHFEAFQLGMAPVYMAFLRFMGDENDARNYSYSLEVGANGRKMIWEGTPRSIRDSHRKVR
DSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDSGACIPNLFS
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggagctggacagcatcgagtgcgtgtcctactccgacggcatggagggcgacgacgac
gccgcggccgtcacctccgcgcagctcccgcgccccttcctcaagtccgcctcctccgcc
ggcagcgccgccgcggcggccgtcaacgtggtcgtcgcctccgaccgcgccggggccgcg
gggccgggcggggcggggctgggggccggggccgggccgctggtcatatcgccggccacg
ggcgtgcacgagctgctcgagtgccccgtctgcaccaactccatgtacccgcccatccac
cagtgccaaaatggtcatactctgtgttccacctgcaaaactcgggtgcacaaccgctgc
ccaacctgtcgacaggagctcggtgacatcaggtgtctggctttagaaaaagtggcagaa
tcacttgagctgccctgcaaatactactctcttggttgtccagaggtcttcccatactac
agcaaactcaagcatgaatcacagtgcaattttaggccatacaactgcccatatgcaggt
tctgaatgctcagttttaggggatattcccttccttgtcgctcatctacgggatgatcat
aaagtcgatatgcactctggatgtacgtttaatcaccgctatgtcaagtccaacccaaga
gaggttgaaaatgcaacctggatgttaactgtttttcattgtttcgggcagtacttttgc
ttacacttcgaggccttccagcttggaatggcaccggtatacatggctttcctccggttt
atgggcgatgaaaatgatgctaggaactacagctatagccttgaggttggggctaatgga
aggaagatgatatgggagggcactccccgcagcattcgagacagtcacaggaaggtcagg
gacagccatgatggtctgataattcagcgaaacatggctctcttcttctcaggtggagac
aggaaagagttgaaactgcgagtcacaggtcgtatctggaaggaacaacagaatcctgac
tcaggagcctgcattcccaatctattcagctga
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