Panicum virgatum (switchgrass): 120655482
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Entry
120655482 CDS
T07260
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
120655482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120655482
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
120655482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
IMS_C
VHS
Motif
Other DBs
NCBI-GeneID:
120655482
NCBI-ProteinID:
XP_039789253
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All DBs
Position
1N:20399081..20401682
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AA seq
714 aa
AA seq
DB search
MPRPTVSSSFAGRRTPAAAAASAKVELGSNPSASSAAPADSSMASLIERATSTTAPAVDP
ALLRAIKSSARASDGAIRDAFHLLLSLMSKPHSHVRLLAFSIADELFMRSKLFRSLLADA
LDGFLPLAVGFRRAHPLPPPTASAALLRKAAVQALERWHHLFGAHYRQLRLAVEYLKVSA
RVQFPGLRATVEARAAREARTQEILAAKVEQLRENLASIKDEIRSTMDEIRNGLEIIRTE
YEKFEGYVNDDDAEEEIASLSLRSIRMASLMAGEWVPETQENEAVFDALREAYRLLVSKH
LVTVKEWISVLIRVDLPDNRFRDSALKEFIDVKNEIRAVRDRCSELGLNLDNVRRRKGDQ
EEEDDEFWVEGNIEPPSPARVQSSVDVASTSRDTGKGKRVVGGENSDTGKSPVAASATRN
LDPEKSKLFTEAPVVPWSSVLDRWGSSRDAHVNQRGLDLESHWGRVDNDAVIPAAKIAEL
NVHCSIYTEAPVEILPCHAPLKKGGLCQRRDLKVCPFHGPIVPRDAEGNPMEQHGGSSGA
EVDHVEHRDTTGNSNELNRNSVDYMQESSSKMTDISNDDYGSTVRTHDLGEITVEQLARQ
AIKNVRKRDMDHKALERAQRQRIRQHNEDVLREAAIASTSHSAAAYEQPPEAQGRRGRRG
KTKAPTLASMLKKKITTKDRIAERLLNTRATDATIREASHNEDMSYREAFPNQW
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcccgacggtctcctcctccttcgccggccgccgcacgccggcggcggcggcc
gcgtccgccaaagtagagctgggctcgaacccctccgcttcctccgcggcgccagcggat
tcctctatggcgtccctcatcgagcgcgccacctccaccacggcgcccgccgtcgacccc
gccctcctccgcgccatcaagtcctcggcccgcgcctccgacggtgccatccgcgatgcc
ttccacctcctgctctccctcatgtccaagccccactcccacgtgcggctccttgccttc
agcatcgccgacgagctcttcatgcgctccaagctgttccgctccctcctcgccgacgcg
ctcgatggcttcctcccgctcgccgttgggttccgccgggcgcacccgctcccgccgccg
accgcctccgcggcgctactccgcaaggccgccgtccaggcgctcgagcgctggcaccac
ctcttcggcgcgcactaccgccagctccgcctggccgtcgagtacctcaaggtgtccgcc
cgcgtccagttccctggcctacgggccaccgtggaggctcgagcggcccgcgaggcgcgc
acgcaggagatcctggccgccaaggttgagcaactgcgtgaaaacctcgcgtcaatcaag
gatgaaatccggtcgacgatggatgagattcgcaacgggttggagatcatccgtactgaa
tatgaaaagtttgagggctatgtgaacgatgatgatgcagaggaggagattgcatccctg
tcgttgcggagtattaggatggcttcattgatggccggagagtgggtgcctgagactcag
gagaacgaggctgtttttgatgcactgagggaagcttaccgactgcttgtgtcgaagcat
ctggtcactgttaaggagtggatatctgtgcttataagggtcgatcttccagacaacagg
ttcagagattctgcattgaaggagttcattgatgttaagaatgagatacgagcagtgaga
gatcggtgctctgagcttggccttaaccttgataatgtccgtaggcgcaagggtgaccaa
gaggaagaggatgatgagttttgggtggagggaaacatagagccccctagtcctgccaga
gtccagagcagtgtagatgttgcaagcaccagcagggacaccggaaagggaaagagggtg
gtgggtggagaaaattctgatactggcaagtcaccagttgctgctagtgcaactagaaat
cttgacccggagaaatcaaagctcttcactgaagcccctgtggttccatggagctctgta
ttggaccgttggggctccagcagggatgcacatgtaaaccagagggggcttgatctagag
agtcattggggaagggtggacaatgatgctgttatacctgcagcaaagattgcagagttg
aatgttcattgctccatttatacagaagctccagttgagatcctaccatgtcatgcccct
ctaaagaaaggagggctttgccagagaagggatcttaaggtatgtccttttcatgggccg
attgtcccacgtgatgctgaaggaaatccaatggagcagcatggtggtagttctggtgcc
gaagtagatcatgttgagcaccgtgacacaactggaaattcaaatgagctgaacagaaac
agtgttgattatatgcaggagtcttcttcaaaaatgacagatataagtaatgatgactat
ggcagtacagttagaactcatgatctgggtgaaatcactgtagagcagttggcgagacag
gcaattaaaaatgtccggaaaagagatatggaccataaggcattggaaagagcacaacgt
caaagaatccgtcagcacaatgaagacgttctgcgggaggcagctattgcttcaacttcc
cactctgcagcagcctatgagcagcctccagaagcacagggtcgacgaggccgccgaggt
aaaacaaaggcaccaacgctggcatcaatgctgaagaagaaaattaccaccaaggataga
attgcagagaggcttctgaacactcgagccacggatgcgacaataagagaggcttctcat
aatgaagatatgagctacagggaagcatttccaaaccagtggtag
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