Panicum virgatum (switchgrass): 120655621
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Entry
120655621 CDS
T07260
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120655621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120655621
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120655621
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Step II factors
120655621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
AAA_16
nSTAND3
GIPC1_GH2
TsaE
Sigma54_activ_2
Flavi_DEAD
ABC_tran
PhoH
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
120655621
NCBI-ProteinID:
XP_039789465
LinkDB
All DBs
Position
1N:complement(30481296..30486085)
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AA seq
1229 aa
AA seq
DB search
MAPPAAAGPGDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDSATVTEFDA
RLKEKGADFPDYFVRTLLTIIQAILPPSSSNPSSAAVAAGPAGAEASKFPGLARPDDPDH
ARNLRLELERDADAAAPAPTRDDRDRRRDGRGRDRDYDRGGRGRDYDRGGRDHDRDRGGR
DHRDQDRDRSGRDRDRGRDHEYARDRDRDRGRDRDGDRYRDRDSGRDRDMERDRERDRGR
SRRYEEEEEEDRGVGGRGREVAASNPSGEPELYQVYRGRVTRVMDTGCFVRLEDVRSGRE
GLVHVSQMASRRVANAKELVKRDQEVYVKVVSVKGQKLSLSMRDVDQDTGKDLLPMQRGA
DDAPRANPSGGVGGAMGSGKRLGLSGIVITEEDEAAPTSRRPLKRMSSPERWEAKQLIAS
GVLDVRDYPMFDEDGDGMMYQEEGAEEELEIELNEDEPAFLQGQSRFSIDMSPVKIFKNP
EGSLSRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTGERHLAQELRGV
GLSAYDMPEWKKEAYGKALTFGQRSKLSLQEQRQSLPIYKLKKELIQAVHDNQVLVVIGE
TGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFE
DCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLIKRRS
DMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHL
TEPEGDILLFLTGQEEIDHACLCLYERMKGLGKDVPELIILPVYSALPSEMQSKIFDPAP
PGKRKVVVATNIAEASLTIDGIYYVVDPGFAKINVYNSKQGLDSLVITPISQASAKQRAG
RAGRTGPGKCYRLYTESAYRNEMPPTTIPEIQRINLGSTVLNMKAMGINDLLSFDFMDPP
APQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTII
AMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQS
RSLRRAQDVRKQLLTIMDRYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVE
NQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFYKGADPTKM
SKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccggcggcggcggggcccggcgacgacggtctccgaaagctggagtacctc
tccctcgtctcgaaggtatgctccgagctcgagacccacatcggcgtcggcgacaaggtc
ctggccgagttcatcacggaactcggccgcgactccgccaccgtcaccgagttcgacgcc
cggctcaaggagaagggcgccgacttccccgactacttcgtccgcacgctcctcaccatc
atccaagccattctcccgccttcctcctccaaccctagctccgccgccgtcgccgcgggc
cccgccggcgcagaggcgtccaagttccccgggctcgcccgccccgacgaccccgaccac
gctcgcaacctccgcctcgagctcgagcgggacgccgatgcggccgcccctgcccccacc
agggacgaccgtgaccgccgccgcgatgggagaggccgtgaccgggactacgaccgcggc
ggccgtggccgggactatgaccgcggcggccgtgaccatgaccgtgaccgcggtggccgg
gaccaccgtgaccaggaccgtgatcgcagcggcagggacagggatcgaggccgtgaccat
gagtatgcccgtgacagggaccgggaccgtggccgagaccgtgatggggatcggtatcgg
gaccgagacagcggaagggacagagacatggagagggatagagagagagatcgtgggagg
agcaggaggtatgaagaagaggaggaagaggacagaggtgttgggggaagggggagggag
gttgctgcttcgaatcccagtggcgagccagagctctaccaggtttaccgagggagggtg
acccgggtaatggacaccgggtgctttgtcaggcttgaggatgtgcgcagtggccgcgag
ggacttgtgcatgtctcacagatggcgagcaggcgggtggcaaatgcgaaggagttagtg
aagcgtgaccaggaggtgtatgtcaaggtagtatcagtgaaggggcagaagttgagtttg
tcgatgcgggatgtggatcaggatacagggaaggacctcctgccaatgcagcgtggtgct
gatgatgcgccaagggcgaacccatctggtggcgttggtggtgccatgggttctggcaag
aggttgggtctgtcgggcattgtgatcacggaggaggatgaggccgcgccaacatcacgg
cggccgctcaagcgtatgagctctccggagagatgggaggcaaagcagctgattgcttct
ggtgttctggatgtgagggattacccaatgtttgatgaggatggggatggcatgatgtac
caggaggaaggtgcagaggaagagcttgagatcgagcttaatgaggatgaaccagcattc
ttgcagggacagagcagattttcaattgatatgtcgcctgtaaagatattcaagaatcct
gagggttcactgagccgagcagcggccctgcagactgccctcataaaggagcgtcgtgag
gtccgagagcaggagcagagagccatgttggattcgatccccaaggatctgaatcgacca
tgggaggaccctatgcctgatacaggtgagcggcaccttgcacaggagctgagaggtgtt
ggcctttcagcttatgacatgccagagtggaaaaaggaggcatatggaaaggctttaact
tttgggcaaaggtcaaagctttcattacaagagcagaggcagtctcttcctatctacaag
ttgaagaaggagcttattcaagctgtacatgacaatcaagttctggttgttattggagag
acaggttctgggaagacaactcaggtgacacaatatttggctgaggcaggttataccacc
aggggtaaaattgggtgcactcagcctcggagggttgctgcaatgtctgttgcaaagaga
gtggcagaggaatttgggtgccggttgggagaggaagttggctatgccatccgttttgag
gactgtactgggccagacacagtgataaaatacatgactgatggtatgcttctgcgtgag
attcttgttgatgagaacctttcccaatattctgttatcatgctcgatgaagcccatgag
aggacaatccacacagatgtgctctttggtttgctgaaacaacttattaagcgcagatct
gacatgaggcttattgttacctcagccacccttgatgctgagaagttctcaggatatttc
tttaattgtaacatcttcacaattcctggaagaacattcccagtggagatactctacaca
aaacaacctgagagcgattacttggatgcagcattgattactgttctgcagattcatttg
acagagccagaaggagacatccttcttttcttgacaggacaagaggagattgaccatgcc
tgcctatgtctgtatgagaggatgaaggggttaggcaaggatgttccagagctcataatt
ttgcctgtgtatagtgcccttcctagtgagatgcaatcaaagatctttgacccagctcca
cctggcaagaggaaagttgttgtggccaccaatattgctgaggcttctttgacaatcgat
ggcatatactatgttgtggatcctggttttgccaagatcaatgtgtacaattcgaaacag
gggcttgactcattggttatcactccaatctcgcaagcatctgcgaaacagagagctggg
cgcgctgggcgtactggacctggcaagtgttatcgtctatacactgaaagtgcctaccgt
aatgaaatgccccccacgaccattccagaaattcagaggatcaacttggggtctacagta
cttaatatgaaggcaatgggtataaatgacctattatcctttgattttatggacccccca
gcacctcaagcactgatttctgccatggaacagttgtatagccttggtgctcttgatgaa
gagggccttctaaccaaactggggaggaaaatggcagaattcccattggacccaccactt
tcgaagatgctactagccagtgttgaccttgggtgcagtgatgagatactgactatcata
gcaatgattcaaacagggaacatattctacaggccacgagaaaaacaggctcaagctgat
caaaaaagggctaaatttttccagccagagggggatcatcttactcttcttgctgtatac
gaggcttggaaggcaaaaaacttttctggtccctggtgttttgagaactttgttcaatca
agatcattgaggagagcacaggatgtgaggaagcaacttctcactatcatggacagatat
aaacttgatgttgtctctgctgggaaaaacttcacaaagataaggaaagcgattaccgct
ggcttctttttccatgctgcaaggaaggatccccaggagggatacagaaccttggttgaa
aaccagccagtgtacatccaccccagcagcgctttgttccagaggcagccagactgggtc
atctatcacgagctcgtgatgacgaccaaggagtacatgagggaggtgactgtgattgat
cctaaatggctggttgagcttgcgccaaggttttacaagggtgcagaccccaccaagatg
agcaaaaggaaaaggcaggagagaattgaacccctgtacgatagataccacgagcccaac
tcttggcgccttagcaagcgcagagcttga
DBGET
integrated database retrieval system
