KEGG   Panicum virgatum (switchgrass): 120655647
Entry
120655647         CDS       T07260                                 
Name
(RefSeq) flowering time control protein FY-like
  KO
K15542  polyadenylation factor subunit 2
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120655647
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120655647
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     120655647
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WDR55 WD40_Gbeta Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 ASA1 Beta-prop_Aladin Beta-prop_WDR19_1st CFAP251_N Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N PAC11 Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_DCAF4 eIF2A Tricorn_2nd Beta-prop_SCAP NBCH_WD40 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_HPS5 WD40_like WDR54 WD_LRWD1 DUF3642
Other DBs
NCBI-GeneID: 120655647
NCBI-ProteinID: XP_039789503
LinkDB
Position
1N:33846753..33855162
AA seq 709 aa
MMQQQQQQLPPPPQHPPPQGGGGGEFYRGPPMRQLSAASSTNLTPEYVGHPGPPPPQQHQ
PPYDAYGDSFGAKRMRKPVQRRTVDYTSSVVRYVQARMWQRDARDARDRFTLQPTPAAVL
DMLPSVAYPDNPSTSFAAKFVHSSINKNRCSINRVVWTPTGRRLITGSQSGEFTLWNGQS
FNFEMILQAHDQPVRSMVWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRGLS
FSRTDLKFCSCSDDRTVKVWDFARCQEEKSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVK
LWDARSGRELNSFHGHKNIVHCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHIK
DVTALAWHPFHEEYFVSGSFDGAIFHWLVGHEAPQVEINNAHDNSVWDLAWHPVGYLLCS
GGSDHATKFWCRNRPGDLTRDRYSSGQTQGYGDQHPTFGARAMGGFQMPEPPTPGPFAHG
LSRNEGTIPGIGVAMTLDGSDQGEQRPSIPGLPPGQPPLPPGPHPSLLGQQQQYQQMPQQ
QHTQFHRPPPPNMHQLQPPAHMLSHSQGSRPTLPQLPSMGGPSMPSPVNPPLPPMPHPTA
MQGSQSQMMPQMPQHMMGLNQMHPGSVPPGNVPPMGGFPSGMGNIQGASGSIQNFPMGGI
YNRPQGQMAPQGQMTSIPGLSSYQGMGNVGLTPPPPPPQHPPPGGSTPQ
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgatgcagcaacagcagcagcagctacctccgccgccgcagcacccgccgccccagggc
ggcggtggcggggagttctaccgtggaccgccgatgcggcagctatcggcggcgtcctcc
accaacctcacccctgagtacgtgggtcacccgggccccccgccgccgcagcagcatcag
ccaccctacgacgcttatggtgacagttttggtgctaaaaggatgcggaagcctgtccag
cgacgaacagtggactacacaagcagtgttgtccgttatgttcaagctcgcatgtggcaa
agggatgcaagggatgcaagggacagattcacattgcagccaactccagctgctgtccta
gatatgttaccatctgttgcttatcccgacaatccctccacaagtttcgctgccaaattt
gtacattcttcaatcaataagaaccggtgctctatcaatcgtgtcgtgtggacccctaca
ggccgtcggcttatcactggatcacaaagcggtgaatttacgctatggaatggacaatct
tttaactttgaaatgatacttcaggctcatgatcaacctgtgagatcaatggtttggagt
aacaatgaaaattggatggttactggtgatgatggtggtgcaatcaaatattggcaaagt
aacatgaacaatgtcaaagtgaataaaacagcccatagagaatcagttcgtggtttaagc
ttttcaagaacagacttgaagttctgctcctgctctgatgatagaaccgttaaggtttgg
gattttgcgagatgccaggaggaaaaatcattaactggccatggttgggatgttaaaagt
gtcgattggcatcctacaaagtctttactagtatcaggtggtaaagactatcttgtgaaa
ctttgggatgcaagaagtggtagagagctaaattcattccatggtcacaaaaatattgta
cattgtgtaaagtggaatcagaatgggaactgggtactgacggcctcaaaggatcagatt
attaagctgtatgatattagatccatgaaagagcttgaatcctttcgcgggcacatcaag
gacgtaactgctttggcatggcatccatttcatgaagaatattttgttagtgggagcttt
gatggagcaatatttcattggttggtcggtcatgaagctccacaggtcgaaattaacaat
gcacatgacaatagtgtgtgggatcttgcctggcatcctgtaggctacctactttgcagc
gggggcagtgatcatgctacaaaattctggtgtagaaacaggcctggtgatcttacccgg
gatagatacagcagtggacagacacaaggttacggtgaccaacatcctacctttggtgct
cgtgctatgggtggattccagatgcctgaacctccaacgcctggtccgtttgctcatgga
ttgtcacgtaatgagggcacaatccctggcattggggttgcaatgaccttggatggatct
gatcaaggagagcagaggccatctattccgggtcttccacctgggcaacctccgctgcca
ccaggtcctcatccatcacttcttgggcagcagcaacaataccaacagatgcctcagcag
caacatacccaatttcatcggccaccacctccaaatatgcaccaattgcagccaccagct
cacatgctttcacattcgcaaggatctcgacctacactaccccagcttccatcgatgggt
gggccatcaatgccatcaccagtgaatccaccacttccaccaatgcctcacccaacggcg
atgcaaggttcacagagtcagatgatgccccaaatgccacagcacatgatgggcctaaat
cagatgcatcctggttctgttcctcctggcaatgtacctccaatgggtgggttcccaagt
gggatgggaaacatccaaggagcatcaggttccatacaaaattttccgatgggtggcatc
tacaaccggcctcagggacaaatggctccacaaggacaaatgacatccattccaggtcta
agctcttaccagggaatgggcaatgttggccttacaccacccccgccgccgccacagcac
ccgccgcctggaggttcaacaccacagtga

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