Panicum virgatum (switchgrass): 120655661
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Entry
120655661 CDS
T07260
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120655661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120655661
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120655661
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
120655661
NCBI-ProteinID:
XP_039789542
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All DBs
Position
1K:44078357..44083560
Genome browser
AA seq
1400 aa
AA seq
DB search
MPRVTIFIDSDDEEEGGGGAGQAGRALGKGAAIAGGGEALKLVKPEPVEDAAFRPLGPGA
LGLAVVPIPPRAENPRALPSPRARSPRAPSSAPPGAAARPPARPQPEIIDISEEHDDDSG
FRGAVPLRMVEGSGSAVRRVKDEPFDDFGSDWVPSPAAKRALAAVAPPGTSCAEKRRKRE
RPSPSRAKRDARGDNHALDRSSSASGAGRRAVGMPDEARSSKKRDDAKTRETGSGSAGGR
SHSTNKKALVPSEESRGAPGKARRGGSTRGGGRSRSALPASWSGTTVGSRIRSRSRQQGR
VQYAAYPARVPSEETEEDEDEDEEEVQKQEQTRGEDVEAMEVDDDEDSGAANEVAQEREQ
EEDVEGRSSSQDGHGDSEDEYKEGKDSAAVADNEEEEAGGKELLEDEGDNQEDSHSIYDA
QEEDEDEDEESDDEQELDEAEEMQPFTPSNATAGGSVRSGADGPRVFRRRIFEGIHLLEN
PDKTVGKGIEGRTRSKRKCKDKKLLRRGTFSKPYNIDIPDSTSDSEEDTVVPPEPQPVLM
SSSDEGTRIFGKRKRRRARNKGRHKRLSTSSDESMEYTAYAKDAGQPFRRLKKGVSNLQV
GKDGSNPGRAKYNGPNGRNPMGMANTRVDISFKRKARMIRMKRGRAARSAYDELLNSLFA
EWENHIDVPDLAETGNSLPLVFSFGDEDEPYEKTENDKYQEDLWREYDIAFESMNIGSHT
CEEDGKEVPPVEQTSCKNGKHEFIIDEQIGVRCKHCNVVDLEIRHVFPAMGKFSAERESA
IEPELDWMCKEMLNLFEENDVLVSNGREVPCNFGGHKSGSVWDLIPGVKEDMFPHQQDAF
EFMWTKLAGGTTIEQLKHNANTDGGGCVISHAPGTGKTRLAITFVQSYLEVFPHCSPVII
APRGMLSTWEKEFRKWKVKLPFHVLNSTEINWSEDKTIQEQAAKNGTFHRRLLTEKMDQN
YRRLVKLGSWMNGTSIIGVSYSLFRKLVNDEGMDGDKVTKLLLEKPDLLVLDEGHTPRNK
KSLIWKVLREVRTEKRIILSGTPFQNNFEELYNTLCLVRPKDAILLEKGEGKDFWTSLRL
SDITKANIDQIRKKLDPVVHIHSGKFLQKSLPGLRESVVILNPLPYQKEVIACMEKTMAI
GLEGEYKISLASIHPSLIARAKLSEEEESMVDKSKLESLRSCPSEGVKTRFVLEIVNLCE
ALNERVLVFSQYLDPLSLIMEQLKARFNWAEGKEILLMSGNVLVKNRQTMMEAFNNMKSK
AKVMLASTKACCEGITLIGASRVVLLDVVWNPSVGRQAIGRAYRIGQEKIVYTYNLIAEG
TAEKSKYDRQAKKEHMSKLLFSKEAEHGDLPPELTFTDRILEEMTARDDLKKLFVKIYVD
NQTDGSSGEMEKNTTCPDTS
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcgtgaccatcttcatcgacagcgacgacgaagaagaaggcggcggcggcgcc
ggccaagcagggcgcgcgctcgggaagggcgccgcgatcgcgggcggcggcgaggccctg
aagctcgtcaagccggagcccgtcgaagatgcggccttcaggccgctgggtccgggggcg
ctggggctcgcggtggtgccgatcccgccgcgggcagaaaacccccgcgcgctgccgtcg
ccgcgggcacggagcccgcgcgcgccgtcctcggcgccgccgggcgccgcggcacgcccg
cccgcccggcctcagcccgagattatcgacatctctgaagaacacgacgacgattccggg
ttccgtggcgccgtgccgctccggatggtcgaggggagcggcagtgccgtcaggcgcgtc
aaggacgagccattcgacgatttcggcagcgattgggttccatccccggcggcgaagcgc
gcgttggcggcggttgcgccgcccggaacctcctgcgcggagaagagacggaagagagag
cgccccagccccagcagagccaagcgtgacgcgcgcggcgacaaccacgcgttggaccgg
agctcgagcgcatcaggggctgggcgtcgcgcggtggggatgcctgatgaggccaggagc
tcgaagaagagggacgatgcaaagaccagagaaacaggcagcggaagcgcgggtggccgg
tcgcattcgaccaataagaaggccctcgtgcccagcgaggaatccaggggtgcccccggc
aaggcgaggcgtggagggagtacgagaggtggcgggaggagccgcagtgctttgccggcg
agctggagcgggaccacggtcgggtccaggatccggtcaaggtcgcgtcagcaggggaga
gtgcagtatgctgcgtatcctgctcgagtgccgtccgaggaaacagaggaggacgaggac
gaggatgaagaggaggtgcagaagcaggagcagacaagaggggaagatgtggaggcgatg
gaggtggatgacgatgaggacagtggggctgccaatgaagtagcccaagagcgtgagcag
gaagaggatgtggagggaagaagcagcagccaggacggccatggcgatagtgaggatgaa
tacaaagaaggcaaagattctgctgctgttgctgataatgaggaggaggaggcgggggga
aaggaattgttggaggacgaaggtgacaatcaagaagacagccatagcatctacgacgcc
caagaagaagatgaagatgaagatgaagaatctgacgatgagcaggaattggatgaagca
gaggagatgcagccattcacgcctagcaacgctacggcaggtggcagtgtcaggtcagga
gccgacggcccccgagtcttcaggagaaggatttttgaggggatacatttgcttgaaaac
ccagacaagactgttggcaagggtattgaagggcggacacgatcaaagcgaaaatgcaag
gacaagaaactgctcagacggggaactttcagtaaaccttacaatattgatattccagac
tcaacatcagattctgaagaggatactgtagtaccaccagagcctcagccagtgctaatg
tcatcaagtgacgaaggcaccaggatttttggcaaaagaaagcgcagaagggcaagaaac
aagggacggcataaaagactgagtaccagtagtgatgagtctatggagtacacagcatat
gcaaaggatgccgggcagccttttcggaggctgaagaagggggtttccaatctgcaggtt
ggcaaggatggttcaaatcctggccgtgccaaatacaatggcccaaatggtcggaatccg
atgggcatggccaatacacgggttgatatttccttcaaaagaaaggcacgtatgattagg
atgaagcgcggtcgagcagcaagatctgcttatgatgaactactcaactccttgtttgcc
gaatgggagaatcatatagatgttcctgatcttgcagaaactggaaatagtttgcctttg
gtgttctcattcggagatgaggatgaaccatacgaaaaaacagaaaatgacaagtatcag
gaagatttgtggagggaatatgacattgcttttgaatccatgaatattggttctcacact
tgtgaagaggatgggaaagaagttcctccagtggaacaaacttcatgcaaaaacgggaag
catgaattcattatcgatgaacaaataggagttcggtgcaagcattgtaatgttgtcgat
cttgagatcagacatgtatttcctgctatggggaaattttctgcagaaagggaatcagca
attgaacctgagttggactggatgtgtaaggaaatgctcaatctttttgaagaaaatgat
gtgctggtatcaaatggacgtgaggtaccatgcaattttggtggtcacaaatctggttca
gtctgggatctcattcctggggtcaaggaagacatgtttccacaccagcaggatgcattt
gagttcatgtggactaagctggcaggaggtactacaattgaacagttaaagcacaacgcg
aacactgatggaggtggctgtgttatctctcatgcccctggaacaggaaagacccgacta
gcaatcacatttgttcaatcctaccttgaggtcttcccgcactgtagccccgtgatcatt
gctccaagggggatgttatctacatgggagaaggagttcaggaaatggaaggtgaagctc
ccttttcatgtactgaattccactgagatcaactggagtgaagataagaccatccaagaa
caggctgcaaagaatggaacttttcatcggaggttattgacagaaaaaatggatcaaaat
tataggagattggtgaagctagggtcctggatgaatggtaccagcataattggtgtgagc
tactcgcttttcaggaagctagtgaatgatgaaggcatggatggggataaggtgacaaag
ctccttcttgagaaacctgacctgcttgtccttgatgaagggcacacgccaaggaacaag
aaaagccttatctggaaggttcttagagaagtccgcactgaaaaacgaataattctgtcg
gggactccgttccaaaacaactttgaggagctttataacaccttgtgtcttgtcaggcca
aaggatgcaattcttttggagaagggtgagggaaaagatttctggacttcattgagattg
agtgacatcacaaaggcaaacatagatcaaataaggaaaaaactcgaccctgttgtgcac
atccatagtggtaaatttcttcagaagtctctgccaggactgagagaatccgttgtgatt
ctgaaccctcttccttatcagaaagaagtgatcgcatgtatggagaagactatggcaata
ggtcttgagggggaatataagatctcacttgcatcgatacatccatccctcattgccaga
gcaaaattgtctgaggaggaggagtctatggtggacaagtccaagctagagagtttacgg
tcctgtccatctgaaggggttaaaacgaggtttgttttggagattgtcaatctttgtgaa
gcgttaaatgagagggtgctcgtattcagtcaatatcttgatccattgtccttgatcatg
gagcagctgaaggcaaggttcaattgggctgaaggcaaagagatcctgttaatgagtgga
aacgtcctggttaaaaatcgccaaaccatgatggaggctttcaataacatgaaaagcaag
gccaaggtaatgcttgcatcaacaaaggcatgctgtgaaggcattacacttattggggca
tcacgtgtggttctacttgatgtcgtgtggaacccttcagttggaaggcaagcgatcggt
cgagcttacagaattggtcaggagaagattgtgtacacatacaatctaattgcagaaggc
acagcagagaagagcaaatatgacagacaagctaagaaggagcacatgtctaaattgctc
ttttcaaaagaagcggagcacggtgacttaccaccagaactaacattcactgataggatt
ttggaagaaatgactgcccgtgacgacctcaaaaaattgtttgtaaagatttacgttgat
aatcaaaccgacgggtcatctggagagatggagaagaacactacatgtccagatacctca
taa
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