Panicum virgatum (switchgrass): 120655687
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Entry
120655687 CDS
T07260
Name
(RefSeq) oligoribonuclease-like isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120655687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120655687
03009 Ribosome biogenesis [BR:
pvir03009
]
120655687
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
120655687
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
RNases
120655687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-GeneID:
120655687
NCBI-ProteinID:
XP_039789561
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All DBs
Position
1N:complement(35036640..35045837)
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AA seq
265 aa
AA seq
DB search
MLCPLNCTGLASSGEMRKLGNMFSALHLDAENSGEDNSGAEVAQAFSTTEETASRELGKT
EQNETIAVHYEEGALVSSSGDYRMPLVWIDLEMTGLDITKDRILEIACIITDGKLTKQIE
GPDLVINQSKDCLDNMDEWCKTHHSASGLTEKVLQSELSECDAEAQVLDFVRRHISSGTP
LLAGNSVYVDLLFLKKYMPQLAAIFSHVIVDVSSVMALCMRWYPKERKQTPRKQKAHRAM
DDIKESIRELKYYKDNIFKPQKSKR
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgccccctcaactgtactggactcgcgtcgagtggagaaatgaggaagcttggg
aacatgttttcggctctacacctagatgctgaaaatagtggggaagataacagtggagct
gaagttgcgcaggcattttccacgacagaagaaactgcttccagggaacttggtaaaact
gagcagaatgaaacaattgcagtacactatgaggaaggggcacttgtatcatcctctggt
gattacaggatgcctttagtatggatagacttggaaatgactggtttggatattacgaaa
gatcggattttggagattgcttgtatcattacggatggtaaacttacaaaacaaatagag
ggtcctgacttggttataaaccagagcaaagattgtttagataatatggatgaatggtgc
aaaactcaccactcagctagtggtttgacagaaaaagtactgcagagtgaactttctgaa
tgtgatgcagaggcacaagtgttagacttcgttaggaggcatataagttcaggcacccca
ttattagctgggaattctgtttatgtggatttattatttctgaagaagtatatgccacag
cttgcagccattttctctcatgtaattgttgatgtgagcagtgtgatggctctgtgcatg
agatggtatcccaaagaaaggaagcaaactccaagaaagcagaaggcccacagggcaatg
gatgatatcaaagaaagcatcagagaactgaagtactacaaggacaacattttcaaacca
cagaaatctaagcggtag
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