KEGG   Panicum virgatum (switchgrass): 120655840
Entry
120655840         CDS       T07260                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03030  DNA replication
pvir03410  Base excision repair
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120655840
   03410 Base excision repair
    120655840
   03420 Nucleotide excision repair
    120655840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvir03032]
    120655840
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120655840
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     120655840
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    120655840
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      120655840
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2 bHLH_INO2
Other DBs
NCBI-GeneID: 120655840
NCBI-ProteinID: XP_039789734
LinkDB
Position
1N:40716250..40750557
AA seq 2208 aa
MSGRRRPAAGGGGGGGGGGNWRRSGSAAAKEQRLRLGAEELLESRLGFAPYTDGERRLGW
LLTFSPSSWEDEDTGKIYSCVDLYFVSQDGSTFKVKNKFRPYFYAATKDKMELEVEAYIR
RRYEGEISDIEIVEKEDLDLKNHLSGLKRKYLKLQFDTVQQLMRVRNDLLYVVEKNEEKL
DAMEAFETIHGVKRVERPQDYINYIIDLREYDVPYHVRFAIDNDVRCGQWYNVSVSGSDV
LLQRREDLLQRAEVHVCAFDIETTKLPLKFPDAEYDTVMMISYMIDGQGYLIINRECVGE
DIEDLEYTPKPEYEGHFRVKNVPTELDLLKAWFAHMQEVKPGIYVTYNGDFFDWPFLEKR
AAHHGMKMNEEIGFQCDNNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGY
DPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLR
KGSGTLCEMLLMVQAFKANVICPNKHQADLEKFYNNRLLESETYIGGHVECLETGVFRSD
LPTKFQLEPSAYEQLIGNLDRDLQYAISVEGKLDIGSVTNYDEVKDAIKQKLVSLRDHPI
REERPLIYHLDVAAMYPNIILTNRLQPPSIVTDVDCTACDFNRPGKNCLRKLEWVWRGET
YMAKKNDYYHIKRQIESELIQFGGIASSKPFLDLSKPEHLLKLKDRLKKYCQKVHKRVVD
KPITEVREAGICMRENSFYVDTVRSFRDRRYEYKGLNKTWKGKLAEAKASGNSMKIQEAQ
DMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGR
PLELDTDGIWCVLPGSFPENFTFKTKAGKKLTISYPCVMLNVDVARNNTNDQYQTLKDPV
NKLYATHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNEDGTLAELKGFEIKRRG
ELKLIKVFQAEVFDKFLHGSTLEECYSAVASVANRWLDLLDNQGIDVADSELLDFISESS
TMSKSLVDYGEQKSCAVTTAKRLAEFLGDSMVKDKGLHCQYIVAREPQGTPVSERAVPVA
IFETDPEIAKHYLRKWCRISSDASIRSIVDWSYYKQRLSSAIQKIITIPAAMQKISNPVP
RVLHPDWLHKKVREKDDRFRQRKLRDIFSPLAKDEGMQNLNRAGDMEDLLMSNKDLRKNS
SQALDIDKENNPNGASMGAGSNNSRKQQNSITGLNVPLSSRIQNVAADETIDRSIDYQGW
LDAKKRKWKHVREQKKRRRLGAATTFDGPTNTLLSSRNVSQLPGNSRNRATFFQKQELAL
FRSHWQIIQLASSTTAGRIFAWVVAEGIMFKIPINVPRVFYLNSKAPVTEEFPGRRVKKI
LPHGRPCFNLIEVVTTEEQFRAEGKKLAAHLAEPDIEGIYETKIPPELNAVLQIGCVCKV
DKSAKKRNIQDGWDLAELQMKTTAECSYLEQTVSFFYLYHSLSEGRAVYVFYFPTSFRIL
AVVVNPFRNKEISPSFLEKQFRDACQALGSVPENLTFHVDYQTSIDAGTKYVQRMLLEYR
QQHPGPVIGIIECPKLQVIKAAVRALDDFPCVTIPSNARDNNYQALGWQATAGRTSMQRC
VASTQWFNERISLARYAHVPLGNFELDWLLFTADVFFSRALRDQQQVLWISDDGIPDLGG
TYEGDTCFADEVIQPALTYPSAYRRVSVELKIHHLAVNSLLKSSQVDEMDGGSISSFGND
MPPGPHATETDFDDASLCLPAFQVLKQLIQRCVSDAVSSGNVFADAILQHLYRWLCSPQS
KLHDPALHRLLHNVMKKVFALLLAEFRKLGANVIFANFSKIIIDTGKVDLASAHAYCDSL
LKTLQTRDLFEWIELEPLHFWHSLLFMDQYNYGGIQAKTQNVDSSDGDNDIDIVSSWNIA
EYLPKDTQDHFVLIVSEFLYIPWKFMKEQIATQAIIRDDTSCTPSITVMAAENLEGQVIE
HLRDKISTYFADKLLRTVSDILHHFKGKSKSELDEPASRESDPHTHKGDAALEFIKHICA
VLALDQNVQHDILRMRKNLLKLVRVKEFAPEAQFQDPCASFTLPNVICSYCNDCRDLDLC
RDSTLQGQEWRCAVPQCGQPYHREQMENALLQVVRQRERLYHLQDLVCLRCRQVKAAHLS
DQCSCGGSFRCKEESSYFLSKMRVFLNVAVSQKFQLLQDCVEWILEVR
NT seq 6627 nt   +upstreamnt  +downstreamnt
atgagcggccggcgccggccggcggctggaggaggcgggggagggggaggcggcgggaac
tggcggaggagcggctcggcggcggcgaaggagcagcggctgcgtctcggcgccgaggag
ctcctcgagagccggctgggattcgcgccctacaccgacggggagcggcgcctggggtgg
ctcctcaccttctcgccatcatcatgggaagatgaggacactggaaaaatctacagctgt
gttgacctatactttgtgtcacaggatggttctacttttaaagttaaaaacaagtttagg
ccttatttttatgctgcaactaaggacaagatggagttggaagtcgaggcttatatcagg
cgacgttatgaaggagagatttctgacatagaaatagttgagaaagaggatttagatctg
aaaaatcacctttctggcttgaagagaaaatacctgaagcttcagtttgatactgtacag
cagctaatgcgtgtaagaaatgacctattgtatgttgttgaaaagaatgaagaaaaatta
gatgctatggaggcatttgaaacaattcatggtgtaaaaagggtagaaaggccacaagat
tacataaattacatcattgatttacgtgaatatgatgttccatatcatgttcgttttgct
atagataatgatgtgagatgtggacaatggtataatgttagcgtatctggttcagatgtt
ttacttcagagaagggaagacctgcttcagcgtgcagaagtgcatgtatgtgcgtttgat
attgagaccacaaagctgcccctgaagtttcccgatgctgaatacgacactgtaatgatg
atttcatacatgattgacgggcaaggttacctgataattaacagagagtgcgttggggaa
gacattgaagatttggagtacacacctaaacctgaatatgaggggcattttagagttaag
aatgttccaactgagttggatctgcttaaagcatggtttgctcatatgcaagaggttaaa
cccggcatttatgtcacatacaatggtgacttttttgactggccatttttagagaagagg
gctgctcaccatgggatgaaaatgaatgaggagattggtttccaatgtgacaataatcag
ggggagtgtcgggctaagttttcttgccatcttgactgttttgcttgggtgaagcgagac
agttaccttccacaaggaagccaaggtctaaaggctgttacaaaagccaagctaggttac
gatcctttggaggttaatccagaagatatggttcgctttgcaatggagcagccacagaca
atggcttcttattctgtatcagatgctgttgcgacatactacctatacatgacttatgtc
catcctttcatcttttctcttgcaaccataatacctatgtcacctgatgaggtattgcgg
aaaggaagtggaacactttgtgaaatgctgcttatggtccaggcattcaaggctaatgtc
atttgtcctaacaagcaccaagctgatctcgaaaaattctacaataaccgtttattagaa
agtgaaacttatatcggtggtcatgttgagtgtctcgaaactggtgtatttagatctgat
cttcccacaaagttccaacttgaaccatcagcatatgagcaactcattggaaatcttgat
cgtgatctgcaatatgccatttctgtagaaggaaaattggatattggttctgtcacaaat
tatgatgaagtcaaggatgccataaagcaaaagcttgtttcattgcgagatcacccaatt
cgtgaagagcgccctcttatctatcatcttgatgttgctgcaatgtatccaaatatcatt
ttaacaaatagactccagccaccatctatagttacagatgtggactgcacagcatgtgat
ttcaatcgtcctggcaaaaattgcctcagaaagcttgaatgggtctggcgaggagagacc
tacatggcaaaaaagaatgactattatcacataaagaggcaaattgagtcagagctgatt
caatttggtggtatcgcatcgtcaaagccttttcttgacctctcaaagcccgaacattta
cttaaactaaaggatcgtttaaagaaatactgccaaaaggtgcacaaaagagtagttgat
aaaccaattacagaagttagagaagctggaatatgcatgcgtgaaaattcattctatgta
gacacagtacgaagctttcgtgatagaagatatgaatacaaaggtcttaacaaaacatgg
aaaggaaaattggcagaagctaaagccagtggaaattctatgaaaattcaggaagcgcag
gacatggttgttctatatgattctttgcaacttgctcacaagtgcatattgaattctttt
tatggatatgtcatgcgcaagggagcaaggtggtactctatggaaatggctggtgtagtt
acatatactggtgcgaagattatccaaaatgctcggttacttgtagaaaaaattggaagg
ccactggaactggatacagatggcatttggtgtgttttgcctggttcttttccagagaac
tttacttttaagacaaaagctgggaagaagctaacgatatcttatccctgtgtcatgctt
aatgttgatgttgcgagaaataacactaatgatcaatatcaaacgctgaaagacccagta
aataagttatatgcaacacacagtgagtgttccattgaatttgaggttgatggaccttac
aaggccatgatcctacctgcctctaaagaggaagggattctgataaagaagaggtatgct
gtcttcaatgaagatggcaccttggctgaacttaaaggttttgagattaagcgtagaggt
gagctgaagctcataaaagtttttcaggctgaggtatttgacaaatttctccatggttca
acgttggaggaatgctattctgctgttgcctctgttgctaaccggtggttggatctactg
gataatcagggaattgatgttgctgacagtgagttgcttgatttcatttcggaatcaagc
acaatgagtaaatctttagttgactatggggagcagaagtcatgtgctgtaactacagca
aaaagacttgctgaatttcttggagattcaatggttaaagacaaaggactacattgtcaa
tatatcgtcgctcgggaaccacaaggcactccagtgagcgagcgtgctgttccagtagct
atatttgagacagatcctgagattgcgaagcattatttaaggaaatggtgcagaatctcc
tctgatgcaagcattcgatctattgttgattggtcctattacaagcagcgcctaagttca
gccattcagaaaatcataacaattcctgcggcaatgcaaaagatctcaaatcctgttcct
cgagttcttcatcctgattggttacacaaaaaggtcagggagaaagatgatcgatttcgg
cagcgtaaactacgtgatatcttcagtcctttggctaaagatgaggggatgcagaacttg
aatagggctggagatatggaagatttattaatgtcaaacaaggatttgagaaaaaattct
tcccaagctttggacattgacaaagaaaataatccaaatggggcatcaatgggagctggt
tcaaataatagcagaaaacaacaaaattctataactgggttgaatgttccactctcttca
cgaatccaaaatgtggctgctgatgaaacaattgataggagtattgattatcaaggatgg
cttgatgctaagaagagaaaatggaaacatgtccgtgaacaaaaaaaacgtcgaaggttg
ggtgctgctaccacttttgacggtcctaccaatactttgctttcttcaagaaatgtcagt
cagttacctggcaacagtcggaatcgagctacatttttccagaaacaagaattagccctc
tttagatcacattggcagataatccagcttgcttcaagtacaacggctggccgcattttt
gcgtgggttgtggctgaggggatcatgttcaagattcctatcaacgtgcctagagttttt
tatctgaactcaaaggctcctgtcacagaggagtttccaggaaggcgtgtgaagaagatt
cttccacatggacgaccttgtttcaatctcattgaggttgtaactactgaagaacagttc
agggctgaaggcaaaaaacttgctgctcatctagcagagccagatattgagggaatatat
gagacaaaaattccaccggagctaaatgctgttctccaaattggctgtgtatgtaaagtg
gacaaatctgcgaaaaaacgaaatatacaagatggatgggatcttgctgagttgcagatg
aaaacaaccgcagagtgctcatacctggagcaaacagtttcatttttctatttataccac
agcttgtctgaaggaagggctgtatatgtattttacttccctacatctttcagaatactt
gcagtggttgtcaatcctttccgtaacaaagaaatatctccgtcatttcttgaaaagcaa
tttcgagatgcttgccaagccctcggttctgttcctgagaatctcactttccatgtggac
taccaaacatcaattgatgctggtaccaaatacgtgcaaagaatgttacttgagtacaga
caacaacatcctggacctgtcataggcatcatagagtgccctaaactccaagttataaag
gcagctgtacgagcacttgatgatttcccatgtgtaaccattcctagcaatgcaagggac
aacaactatcaggctcttggttggcaagcaacagctggtcgaacaagcatgcagcgttgt
gttgcatcaacccaatggttcaatgaacggatttcacttgctagatatgctcatgtgcca
ttgggtaatttcgaactagattggcttctttttaccgctgatgtgttcttttcaagggca
ttgcgtgatcaacaacaggtactgtggatatctgatgatggaattcccgatctaggaggc
acttatgaaggagacacatgttttgctgatgaagtcattcagcctgcacttacttatcct
agtgcatatagaagggtttctgttgagcttaagatccatcatttggcggttaattctctc
ctaaagagtagtcaagtggatgaaatggatggaggatcaattagtagcttcggaaacgac
atgcctcctggtccacatgccactgagactgactttgatgatgcgagcttatgtttacct
gctttccaggtgctaaagcaactcattcaaaggtgtgtttcagatgcagtgtcatctgga
aatgtatttgctgatgcaatattgcaacatctctaccgttggctttgcagcccacaatca
aagcttcatgacccagctctccatcgtcttcttcataatgtcatgaagaaagtctttgct
ctattgttggctgagtttcgaaagctgggagctaatgttatctttgcaaacttttccaag
attatcatagatactggaaaagtagacttggcatcagcacatgcgtactgtgatagctta
ttaaaaaccttacagacaagggatcttttcgagtggatagagctggaaccattgcacttt
tggcattccttattattcatggatcagtataactatggcggcattcaagctaaaacacaa
aacgtggattcttcagatggtgataatgatattgacattgtttcgagctggaacatagca
gaatacttgccaaaagatacacaagatcactttgtcttaattgtatcggagttcctatac
attccatggaaattcatgaaagaacaaatagctactcaagcaattataagggatgatacc
tcatgcactccatctataacagtcatggctgctgagaacctggagggccaggtcatagaa
cacctccgtgacaagattagcacttactttgcagacaagcttttaagaactgtaagtgat
atacttcaccatttcaaagggaaaagcaagtctgagttagatgagcctgcaagtagagaa
tctgatcctcacacacataaaggcgatgctgcattggagttcattaagcatatttgtgct
gttcttgctcttgatcaaaatgttcagcatgatattctgagaatgaggaagaacttgttg
aagttggttcgtgtaaaggagtttgctccagaagcacaattccaagacccatgtgcctca
ttcactctgccaaacgtgatttgcagctattgcaatgattgtcgggacctggatctctgc
cgcgactcaacactccaaggtcaggagtggaggtgcgcggtgccacagtgcgggcagcca
taccaccgtgagcagatggagaatgcgctcctacaggtggttcggcagcgggagaggcta
taccacttgcaggatctggtgtgcctgcgctgcaggcaagtgaaggctgcacatttgtct
gaccaatgctcgtgcggaggctcgttccggtgcaaggaagaatcatcatatttcctcagc
aagatgcgggtgttcctgaacgtcgcggtcagccaaaaattccagctcctgcaagattgc
gtggaatggattcttgaagtcagatga

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