Panicum virgatum (switchgrass): 120655844
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Entry
120655844 CDS
T07260
Name
(RefSeq) RNA pseudouridine synthase 7-like isoform X1
KO
K15454
tRNA pseudouridine32 synthase [EC:
5.4.99.28
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120655844
Enzymes [BR:
pvir01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
120655844
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120655844
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Motif
Other DBs
NCBI-GeneID:
120655844
NCBI-ProteinID:
XP_039789742
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Position
1N:40853616..40860582
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AA seq
386 aa
AA seq
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MAAPPGGAGIVWQTPANPPEPHDYVISNGRRYVRPYYFEFISHVKNRWAGKTIVDLFTDE
FKGRSREYYVRAVKCGRLQVDGQMVHKDYVVKSSQKISHFLHRHEPPVLAGDISILQNEV
DVVTICKPPSVPVHPCGQYRKNTVVGILQAEHGLTPLFPVHRLDRLVSGLLIFAKNAERA
ERFRQQIEAGLLQKEYVAKVVGVFPDGEQTVDANVNFNAREGRSTVEIGGGAGKEANGKQ
ALTRFQRICTDGTHSIVLCRPVTGRTHQIRVHLKYTGYPIANDELYLSGDFCPRSIKGTS
AGTEMAPSDSDNSAADHGNKDAETDEGFDTDPMCTNCPNLAPVGYDGDEEGLWLHCVRYT
GPDWSYECPYPDWAFLGSVSTKKMKL
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccaccgggaggagctgggatcgtgtggcagacgccggccaacccgcccgag
ccgcacgactacgtcatcagcaacggtcggcgctacgtgaggccttactacttcgagttt
atctcccatgtgaagaacagatgggctggaaagaccattgttgacctcttcactgatgag
ttcaaagggcgttctcgtgaatactatgttcgtgcagtgaagtgtgggaggcttcaggtg
gatgggcaaatggttcacaaagactatgtcgtgaaatcatcacaaaagataagccacttc
ctgcacaggcatgagccacctgtcttggctggtgatatttcaatacttcagaatgaagtt
gatgtcgtaactatttgcaaaccaccttctgtcccagttcatccatgtggccagtaccgt
aagaatactgtagttgggattctgcaggctgagcatgggttgacacccctatttccagtg
catcggttagatcgattggtttcaggcctccttatatttgcaaaaaatgctgagagagct
gaacgtttcaggcaacagattgaagctggtctcttgcaaaaagaatatgtggccaaggtt
gttggtgtatttcctgatggtgagcaaactgttgatgccaacgtaaatttcaatgcacgg
gaaggaaggagtactgtggagattggtggtggtgctggtaaagaagcaaatggaaaacag
gcactcacgaggtttcaaaggatttgcactgacgggactcacagtattgtcttgtgcaga
cctgtaactggtcgaactcatcagataagggtacatctaaaatacactggttatccaata
gctaatgatgagctgtacctttcgggggacttctgtccacgatcaataaaaggaaccagt
gccggtacagaaatggcaccatcagactcagacaatagtgcggctgatcatggcaacaaa
gatgcagaaacagatgagggttttgataccgatccgatgtgcacaaactgtccaaatctc
gctccagtaggttacgatggagacgaggaaggactatggttgcattgtgtgcgatacacg
ggtcctgattggagctatgaatgcccttatcctgactgggcgttccttggtagtgtgtca
acgaagaagatgaagttatga
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