Panicum virgatum (switchgrass): 120655964
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Entry
120655964 CDS
T07260
Name
(RefSeq) histone deacetylase 15-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120655964
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120655964
04131 Membrane trafficking [BR:
pvir04131
]
120655964
03036 Chromosome and associated proteins [BR:
pvir03036
]
120655964
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
120655964
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120655964
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120655964
Membrane trafficking [BR:
pvir04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120655964
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
120655964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
120655964
NCBI-ProteinID:
XP_039789889
LinkDB
All DBs
Position
1N:complement(43510698..43521373)
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AA seq
617 aa
AA seq
DB search
MSMRRFETHTGYFLMASDMQPLSGHEIPSRVVENCGVSDHACHGKCQSCDSDVKPSCAEV
NGISLLIGSHTDGKASKEKCGACTFTYDCAGPDGCLIATNGSCMAVDELTQQFEREQAGA
ALEDLVFSNDEEEDDSDWDPASGLVMNRWFCLNCTVPNVDEVMYCLNCHELKGSGVDGYD
AFKTQIAEAALVSPDTELPEVSTAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLSA
AGIFPSKCALVPPREITKEELLMVHTPDHIESVEQTKNMLYSYFTSDTYANGHSACAAKL
AAGLCADLASLIVSGRVQNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRTGAKKV
LIVDWDVHHGNGTQEIFEGDKSVLYVSLHRHEYGNFYPGTGAAHEVGIHDGQGFSVNIPW
SCGGVGDNDYIFAFKTVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPTGYSIMTSL
LTACSGGRLLVILEGGYNLRSISSSATEVVKVLVGDGSSFDVATAPSKEGLETILQVLKI
QQQFWPILGSTYASLQAHEGSVFSKSTNKKRKHSGGPGPFWWKFGSKRLLYKALYEGPLL
RKIKGFGQGKAIDSADP
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgagaagatttgagactcacaccggatacttccttatggcatctgacatgcaa
ccacttagtggccatgagataccctcccgtgttgtggagaactgtggagtttctgatcat
gcatgtcatggcaaatgccaaagctgtgatagcgatgtaaaaccatcttgtgctgaagtg
aatggaatttccttgttgattggtagtcatactgatgggaaggcttcaaaagagaaatgt
ggagcatgcacttttacttatgattgcgctggtcctgatggctgtttgattgccacaaat
ggaagttgcatggctgttgatgagctaacacagcagtttgagagagaacaagctggggct
gcactagaggatctggttttctctaacgatgaagaggaagatgacagtgactgggaccct
gctagtggccttgttatgaataggtggttttgcttgaattgcacagtgccaaatgtggac
gaggttatgtattgcctgaattgccatgagcttaagggatcaggtgtagatggatatgat
gctttcaaaactcaaattgcagaggcagctttggtatctcctgacacagaattgccggag
gtgtctacagcgattggttttgatgaaagaatgctgctccacagtgagctagaagttaaa
ccaaatccacatccagaaagaccggaccgccttcgtgcaattgctgccagtctttctgct
gcaggaatctttccctcaaaatgtgctttggtaccccctagggaaattaccaaggaggaa
ctcctaatggttcatactccagaccacattgaaagtgttgagcagacaaagaacatgctt
tacagttacttcacttcggatacttatgcaaatggacactcagcatgtgccgccaaactt
gcagcaggactctgtgctgatcttgctagtttgatagtatctgggcgtgttcaaaatggc
tttgcaatggtgagacctcctggacatcatgcaggggtgaagcaagcaatgggtttttgt
cttcacaacaatgcagcagtggctgcgttagctgcaaaaagaacaggtgccaagaaagtc
ctcatagttgactgggatgtgcaccatggaaatggcacacaagagatattcgaaggggac
aaatctgtcttgtacgtatcgttacatcgtcatgagtatggaaacttctaccctggaact
ggagcagcacatgaggttggaattcatgatggtcaaggtttctcagttaatataccttgg
agctgtggcggtgttggagacaatgactacatctttgcttttaagactgtggtgcttcca
atagctgcagaatttgctccagacatcacaataatatctgcaggattcgatgcagctaga
ggtgaccctctgggttgttgtgatgtcactccgacgggatactctataatgacatccttg
ttaactgcttgctcagggggaagattgttagttatacttgagggaggatacaatcttcgg
tcgatatcctcatcagctactgaagttgttaaggtcttagttggggacggttcaagtttt
gatgttgcaacggcaccatcaaaagagggcttggagactattttacaagtcctgaagatt
cagcaacaattttggccaattttaggttcaacctatgcatcactgcaggcacatgagggg
tcggttttttccaaatctactaacaagaaaaggaagcattcaggagggccagggcccttc
tggtggaagtttggaagcaaaaggctactgtacaaagcactctatgagggcccccttctg
aggaagatcaagggcttcggacaaggaaaagcaattgattcggcagatccttag
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