Panicum virgatum (switchgrass): 120656001
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Entry
120656001 CDS
T07260
Name
(RefSeq) RING-H2 finger protein ATL78-like isoform X1
KO
K19040
E3 ubiquitin-protein ligase ATL10/75/76/77/78 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120656001
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120656001
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
120656001
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-RING_11
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-ANAPC11
zf-C3HC4
zf-RING_5
zf-RING_UBOX
zf-RING_16
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
120656001
NCBI-ProteinID:
XP_039789924
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Position
1N:44435263..44439551
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AA seq
272 aa
AA seq
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MIRQTRSGAIPASAPLIPRKPPLLTHSHPAHFLVLDNLAAFPLAPCLMCKSSELQKCLCR
QEKRIEFTWEGRVGVRESITSGGEASMQEGYVLSRRALLLRSYGENAAANQVVAGQEAPP
AADVAGSAGNSFDANVVMILAVLLCALICALGLNSIVRCALRCSTRMSSAPGGGARRQQA
AGGGGPVCAICLGELEPGERVRVLPKCNHGFHVRCVDRWLLARSTRPTCRQSLFAAPPKG
SGCADADADAEPPVRAFLVPLRPEGFVTPYDF
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggcagacaagatctggtgctataccagctagtgcccctctgatccccagaaag
ccaccactgttaacacactcacacccagctcacttcctagtgctcgataaccttgcggcc
tttccattggctccctgcctcatgtgtaagagttcagagttacagaagtgcctttgtaga
caggagaaacggatcgaattcacctgggaaggaagagttggcgtcagagagagtatcacg
agtggaggtgaagcaagcatgcaagaagggtacgtgctctcgaggagggcgttgctgctg
cgcagctacggggagaatgctgccgcgaaccaggtggtggccgggcaggaagctcctccg
gcggccgacgtcgccgggagcgccggcaacagcttcgacgcgaacgtggtcatgatcctg
gccgtgctcctgtgcgcgctcatctgcgcgctggggctcaactccatcgtgcggtgcgcg
ctccggtgctcgacccggatgtcgtcggcgcccggcggcggcgcgcggcggcagcaggcg
gcgggcggcggcgggcccgtgtgcgccatctgcctgggcgagctggagcccggggagcgc
gtccgcgtgctgcccaagtgcaaccacggcttccacgtccgctgcgtcgaccggtggctg
ctggcgcggtccacgcgcccgacgtgccggcagtcgctgttcgccgcgccgcccaagggc
tccggctgcgctgacgccgacgccgacgccgagccgccggtgcgggcgttcctcgtgccg
ctccggccggaaggtttcgtcacgccgtacgatttttag
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