KEGG   Panicum virgatum (switchgrass): 120656017
Entry
120656017         CDS       T07260                                 
Name
(RefSeq) WD repeat domain-containing protein 83-like
  KO
K13124  mitogen-activated protein kinase organizer 1
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120656017
Spliceosome [BR:pvir03041]
 Complex C
  Other components
   Complex C specific factors
    120656017
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st EIF3I WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st WD40_like Beta-prop_IFT122_1st Beta-prop_NWD2_C NBCH_WD40 Beta-prop_Vps41 Beta-prop_NUP159_NUP214 Mala_s_1-like Beta-prop_IFT140_1st Beta-prop_NOL10_N Beta-prop_WDR35_TULP_N PQQ_2 VID27 PPPI_inhib
Other DBs
NCBI-GeneID: 120656017
NCBI-ProteinID: XP_039789938
LinkDB
Position
1N:44560813..44566664
AA seq 303 aa
MSSSGTATQHLPRTEARSLSGHEGAVLAVRFNRDGNYCLSCGKDRTLCLWNPHTGAHVKT
YKSHAREVRDVHSSSDNAKLVSCGADRQIFYWDVASGRVIRKFRGHNSEVNSVKFNEYNA
VVVSAGYDRTVRAFDCRSQSSDPIQTIDTFQDSVMSVNLTKTEIIAGSVDGTVRTFDIRM
GRETVDNLGHPVNCISLSNDNNCLLANCLDSTVRLLDKSSGELLQEYKGHACKSFKMDCC
LTNDDAFVVGGSEDGYVFFWELVDAPVVARFRAHSSVVTSISYHPTKACMLTSSVDGSIR
VWT
NT seq 912 nt   +upstreamnt  +downstreamnt
atgtcgtcctcggggacggccactcagcatctgccgcggacggaggcgcggtcactgtcg
gggcacgagggggcggtgctcgcggtgcgcttcaaccgcgatggcaactactgcctgagc
tgcggcaaggaccgcaccctctgtctctggaacccgcacaccggcgcccacgtcaagacc
tacaagtcccacgcacgcgaggtccgcgacgtccactcctcctcggataacgcgaagctg
gtgtcctgtggcgccgacaggcagattttctactgggacgttgcctcgggccgcgtcatc
cgcaagttccgtggtcacaacagtgaggtcaattcagtaaagtttaatgagtacaatgct
gttgtagtctcagctggttatgaccgtacagtgcgcgcatttgactgcaggtcacaaagc
agtgatccaattcagactattgatacttttcaagatagtgtaatgtcagttaacctaaca
aagactgaaataattgcgggcagtgttgacggtactgttcgtacatttgacattcgcatg
ggtagggagactgttgataatctggggcatcctgtgaactgtatatcattatcaaatgac
aacaattgccttttagctaactgtttagattctactgtgaggcttctagacaagtcatca
ggagaactgttgcaggagtacaaggggcatgcgtgcaagtccttcaagatggattgctgc
ctgacgaatgatgatgcatttgttgttggtggatctgaggatggctatgttttcttctgg
gagttagtggatgcacctgttgttgcaagattcagggcacatagttctgtggtaaccagc
atcagttaccacccaacaaaggcgtgcatgttgacatcttctgtggatggttctatacgt
gtttggacctaa

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