Panicum virgatum (switchgrass): 120656042
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Entry
120656042 CDS
T07260
Name
(RefSeq) putative multidrug resistance protein
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120656042
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120656042
04147 Exosome [BR:
pvir04147
]
120656042
04090 CD molecules [BR:
pvir04090
]
120656042
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120656042
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120656042
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120656042
CD molecules [BR:
pvir04090
]
Proteins
120656042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_22
ABC_ATPase
Zeta_toxin
AAA_21
RsgA_GTPase
AAA_15
AAA_16
AAA
AAA_30
APS_kinase
AAA_23
AAA_28
Motif
Other DBs
NCBI-GeneID:
120656042
NCBI-ProteinID:
XP_039789958
LinkDB
All DBs
Position
1N:complement(45060926..45069737)
Genome browser
AA seq
1241 aa
AA seq
DB search
MGSSAATAAGEKEEAPAAARSSPSFMSVFAHADAVDAALMLLGLVGAMGDGLSFPATLLL
FIRVTNDLGRGPGLVREFTSRIDENARNLVFLACVSWVMAFLEGYCWARTAERQASRMRA
RYLRAVLRQDMEYFDLRAAGSASEVATSVSSDSLAVQDALAEKLPNFAMNVALFVGCYVL
GFAVLWRLALVALPSALLLVVPGVVYGRFLAGIARRIRDQYGRPGAVAEQAVSSARAVYA
SVAEGSTVARFAAALEESARLGVKQGLAKGVALGSNGVTFAIWAFNIWYGSRLVMYHGYP
GGTVFAISSAIVNGGLALGSGLSNVKYFSEAGAAAERILEVIRRVPKIDSASDDGEELPD
VTAEVEFRNIGFRYPSRPECPVLAGFSLRVPAGRTVALVGGSGSGKSTVIALLERFYDPS
SGEVLLDGVDIRRLRVKWLRSQMGLVSQEPPLLATSIMENIQFGKEDATVEEIIVAAKAA
NAHDFITKLPQGYNTQVGESGVQMSGGQKQRIAIARSILKSPKILLLDEATSALDTESER
IVQEALDLASTSRTAIVVAHRLSTIRNADMIAVMQSGEVKELGSHDELSAIENGLYTSLT
RLQQTGDLHEVHEISRIASTSVAAGQSNRHNMSRESSLGRDVGNDDSIEKSSSSMPPVPS
FRRLLMISIPEWKQMLIGSFSAVVFGGIQPVHAYGMGSMFSVYFLADHAEIKEKTRVYVL
LFVALSVLSFLLNIGQHYSFGFMGEYLTKRIREQMLAKVLTFEIGWFDREENSTGAICSQ
LAKDSNAVRSLVGDRMALLVQAGSAVLIACTMGMVIAWRFAVVMLAVQPLIIICFYTRRV
LLKSMFKKSVEAQSPSSKLAAEAVSNVRTVSAFSSQACILRLFKQAQNGPHKESIRQSWF
SGLGLGTSLALMTCSWALYFWYGGKLMAEHHIDTKELMQTFMILVTTGRVIAEAGSTTTD
LARGSDAIASLFAVLDRETEIDPDSPDGYKPEKIKGEVDILNIDFAYPSRPDAVIFRGFS
LSIQQGKSTALIGQSGSGKSTIIALIERFYDPLAGVVKIDGRDIRTYNLRALRRHIGLVS
QEPTLIAGTIRENIMYGTETSSEAEVEDAARSANAHEFISNLKDGYDTWCGDRGFQLSGG
QKQRVAIARAILKNPSILLLDEATSALDSRSENVVQEALDRVMIGRTTVVVAHRLTSIMN
CDMIAVLDRGTIVEKGTHAALMAKGPSGTYFRLVRLQQGCN
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgggtagcagcgcggcaacggccgcaggggagaaggaagaagcgccggcggcggcgcgg
tcgtcgccgtcgttcatgtcggtgttcgcgcacgcggacgcggtggacgcggcgctgatg
ctgctgggcctggtgggcgccatgggcgacggcttgtcgttcccggcgacgctgctcctc
ttcatccgcgtcaccaacgacttgggtcgcggccccggcctcgtccgggagttcacgtcc
aggatagacgagaacgcgaggaacctcgtcttcttggcgtgcgtctcatgggtcatggcg
ttcctagagggctactgctgggcgcgcacggcggagcggcaagcgtcgcggatgcgggcg
aggtacctgcgagcggtgctccggcaggacatggagtacttcgacctcagggcggccggc
tcggcgtcggaggtggcgaccagcgtctccagcgacagcctcgccgtgcaggacgcgctg
gcagagaagctcccgaacttcgctatgaacgtcgccctgttcgtcggctgctacgtcctc
ggcttcgcggtgctctggaggctcgcgctggtggcgctgccgtccgcgctgctgctcgtc
gtccccggggtcgtctatggccggttcctcgccggcatcgcccgccggatcagggaccag
tacgggcgcccgggcgccgtcgccgagcaggccgtgtcgtcggcgcgcgccgtgtacgcc
tcggtggcggagggtagcaccgtcgcgcggttcgccgccgcgctcgaggagtcggcgcgg
ctcggggtaaagcaggggctcgccaagggcgtcgccctcggcagcaacggcgtgaccttc
gccatctgggccttcaacatttggtacggcagccgcctcgtcatgtaccacggctacccg
ggcggcaccgtcttcgccatctcctccgccatcgtcaacggtggcctggctctggggagc
gggctgtcgaacgtgaagtacttctccgaggcgggcgcggcggcggagaggatcctggag
gtgatccgtcgggtgcccaagatcgactcggcgagcgacgacggcgaggagctgcccgat
gtcaccgcggaggtggagttcaggaacatcggcttccgctacccgtcgcgaccggagtgc
ccagtgctcgctggtttcagcctgcgcgtgccggcggggcgcacggtggcgctagtcggc
ggcagcggctcggggaagtcgacggtgatagcactgctagagcgtttctacgacccatcg
tccggggaggtcctgctggacggcgtcgacatccggcggctgcgggtcaagtggctgcgc
tcgcagatggggcttgtcagccaggagccaccattgttggcgacatcgataatggagaac
atacagttcggcaaggaagacgccacggtggaggagatcatcgttgctgccaaggcggcc
aacgcacacgacttcatcacgaagctgccgcagggctacaacacacaagtgggtgagagt
ggtgtccaaatgtctggcgggcagaagcagaggattgctatagccagatcaatcttgaag
tcgcccaagatcctcctgctcgatgaagccacgagtgcactggacacggagtcggagcgt
atcgtgcaagaggcgcttgacctagcctctacgagtcgaacagctattgttgttgcacat
cgcctctccaccatccggaatgctgacatgatcgctgtcatgcagtccggtgaagtcaaa
gagctaggctcccacgatgagctcagtgctattgagaatggcctctacacatctcttact
cgtcttcagcagactggagacttacatgaagtccatgagatcagcagaatcgctagtaca
tctgttgctgctggacaatccaataggcacaacatgagcagggagtcatctttgggacga
gatgtaggaaacgatgacagtatagagaagtcgtcatcatcaatgcctccagtcccatcc
ttcagaaggctacttatgatcagcataccagagtggaagcagatgctaatcgggagcttc
agtgctgttgtgtttggaggcatccaacccgtgcatgcatatggaatggggagcatgttt
tcagtctacttcttggcagatcatgccgagattaaggaaaaaactagggtctatgttctc
ttgtttgttgctctttcagtgctctcattcttgctcaatattggacagcattacagcttc
ggtttcatgggcgaatacctcacaaagaggatcagggaacagatgctagcaaaggtcctt
acatttgagattgggtggtttgatcgtgaagagaactctactggtgccatctgctcgcag
ctagccaaggattccaatgcggtgaggtcactcgtgggtgaccgaatggctctgcttgtc
caagcaggctctgcggtgctcatcgcctgcaccatgggcatggtcatcgcttggcgtttt
gcggttgtcatgttagcagtgcagcctctgatcatcatctgcttctatactcggcgtgtc
ttgctaaagagcatgttcaagaagtcagtagaagcacagtctccgagcagcaagctggcc
gctgaagctgtgtccaacgttcgcactgtcagtgccttctcgtcccaagcttgcatccta
cgcctctttaagcaagcacagaatgggccacacaaggaaagcattcggcagtcatggttt
tcggggctcggcctgggcacctccttggcccttatgacatgttcatgggccctttatttt
tggtacggcggcaagctcatggccgagcaccacatcgacaccaaggagctcatgcagacc
ttcatgatcttagtgaccacagggcgtgtgattgcagaagcaggtagcacaacaacggat
cttgctagaggctcggatgcaattgcttcattgttcgctgttcttgacagggaaacagaa
attgaccctgacagtcctgatgggtacaagccagagaagatcaaaggcgaggtggacatt
ctgaacattgatttcgcatacccatcaaggccagatgcagtcatcttcagaggattttcc
ttgagcatacagcagggcaagtcaacggcactcattgggcaaagtggctccggcaagtca
accatcatcgcgcttatcgagcgattctatgacccacttgcaggggtggtgaagatcgac
ggcagagacataagaacatacaatctcagggcattgcggcgacacattgggctggtcagc
caggagccaacactgattgcaggcaccattagagagaacatcatgtacggtacggaaacc
tcgagcgaggcagaagtcgaggatgctgcgaggtctgcaaatgcacatgaattcatcagc
aacctcaaggatgggtacgacacgtggtgcggcgaccgaggctttcagctctccggaggg
caaaagcagcgcgtcgcgatcgctcgtgccatcctgaaaaacccttccatcctgctgcta
gatgaagctacaagcgcgctggacagccggtctgaaaatgtggttcaggaggcgctggac
cgggtgatgatcggcaggacaactgtagtggtggcgcacaggctcaccagcatcatgaac
tgcgacatgatcgccgtgcttgataggggaacgattgtggagaaggggacacatgcagcc
ctcatggccaagggtccctccggcacttactttagattggttaggttgcagcaaggatgc
aactga
DBGET
integrated database retrieval system
