Panicum virgatum (switchgrass): 120656049
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Entry
120656049 CDS
T07260
Name
(RefSeq) N-glycosylase/DNA lyase OGG1-like
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120656049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120656049
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
120656049
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120656049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
Motif
Other DBs
NCBI-GeneID:
120656049
NCBI-ProteinID:
XP_039789969
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Position
1N:complement(45173829..45176816)
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AA seq
424 aa
AA seq
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MRLPLLPRSPPLAAAVAAMPPRRRRVVRSPPLTPSPPKLSSTPPLAPPLEASKPGTPDHD
DPPHSARRRLLPLAATAVEAQEEWHPLPLSAADLSLPLTLPTGQTFLWRRTSLSPLRFTG
AVGPHLVSLSHLPDAEDGRLAFLLHSDGVCPASSSSVPAARAALCDYLNAAVPLADLWRQ
FAAADERFAEVAARLGGGGARVLRQDPLECVFQFLCSSNNNIKRIEKMVWTLAGYGERLG
EVGGFVFHRFPTIEQLARVSEQELREAGFGYRAKYIVGTAKELQAKPGGGEKWLASLREK
ELPEVIEALCTLPGVGPKVAACIALFSLDQNHAIPVDTHVWKVATQYLLPELAGKSLTPK
LSVVVADAFVTRFGSYAGWAQNVLFIGQLPSQKIVVAEVTSDGLTTKSPTKRKRGGIRDH
VENK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcccgcttcttccacggtcccctccactcgccgccgctgtcgccgccatgcct
cctcgccgccgccgcgtcgtcagatcaccgccgctcacgccttcccctccaaaactctcc
tctacaccgcccctggcccctcccctagaggcctccaagcccggaacccccgaccacgac
gacccccctcactccgcccgtcgccgcctccttcccctcgccgccactgccgttgaggcg
caggaggagtggcacccgctcccgctctccgccgccgacctctccctcccgctcacgctc
cccaccggtcagaccttcctctggcgccgcacctccctctccccgctccgcttcaccggc
gccgtggggccgcacctcgtctccctctcccacctccccgacgccgaagacggccgcctc
gccttcctcctccacagtgacggtgtctgccccgcatcctcctcctccgtgccggccgcc
cgcgccgcgttgtgcgactacctcaacgcggccgtcccgctcgccgacctctggcgccag
ttcgcagccgccgacgagcgcttcgccgaggtcgcggcgcggctcgggggcggcggagcg
cgggtgctcaggcaggaccccctcgagtgcgtcttccagttcctctgctcctccaacaac
aacatcaagcggatcgagaagatggtgtggacgctggcgggatacggggagcggcttggc
gaggtcggtgggttcgtgttccaccggttccccacgatcgagcagctcgcgcgcgtgtcg
gagcaggagcttcgggaggccgggtttggttacagggcaaagtacattgttggcactgct
aaagaactgcaggccaaacctggtggaggtgaaaaatggcttgcctcattgcgtgagaag
gaacttccggaggtgattgaggctctgtgcactctgccaggtgttggtccgaaggttgct
gcgtgcattgctctgttctcacttgatcaaaatcatgctattcctgtcgatacacatgtc
tggaaggttgccacacaatatctattgccggagctagccggcaagagtctgactccgaaa
cttagcgttgttgtcgccgatgcatttgtaactagatttggaagctatgctggctgggca
cagaatgtgctcttcattggccagctaccttctcaaaagattgtggtggcagaagttacc
agtgatggattaaccaccaaatctcctactaaaaggaagcgcggaggaatccgagaccat
gtggagaacaagtaa
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