Panicum virgatum (switchgrass): 120656099
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Entry
120656099 CDS
T07260
Name
(RefSeq) zinc finger CCHC domain-containing protein 8 homolog isoform X1
KO
K13128
zinc finger CCHC domain-containing protein 8
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120656099
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Complex C specific factors
120656099
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Gene cluster
GFIT
Motif
Pfam:
PSP
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
120656099
NCBI-ProteinID:
XP_039790045
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Position
1N:45786196..45803355
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AA seq
536 aa
AA seq
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MASDEFISLDATCEADAEGEQGGDLQVEAPDVNGAEPQASELQPEGEAGTVGSNPKLSDG
NIDLEEGELEDMDIADDDVVVVKDELLDASVQPEVSVAAVQTVIGFEVKLDKGIGAENAP
NYVSNSISVEESPARGVKRARVESKEPSVRVIYSDLTRESKRKLMELMQHWSQWQARRQH
KVKQEAVEEILESGEETYYPALHVGSEKSCAVSFWVDNQARESATMDDESVPLYDREFTL
GSTPLGDSSNTESRADKDDSRCFNCGSYSHALKDCPKPRDNVAISNARKQHNLKRNQSNV
NRVQNRYYQKTPGKFDDLKAGVLGPETRECLGIGENDPPPWLHRMRELGYPPGYLDVVDD
EDKPSGITIFGDGEVKLEYEEGELPGQGEPSPPRKRMTVEFPGINAPIPENGDPWLWGST
PPQSSAHQYSSDSRDYRDRGPPGADHYSSRYHSLDHGQLSPSLGRSHSERGWRSPPRYDN
LPADDGAWTPHSYPSRQFSGHYSSSSEMSSRHYRDRDRDRDRDRDRHDSRHYHHRR
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagacgagttcatcagccttgatgcaacttgcgaggctgatgcggaaggtgaa
caagggggagaccttcaggttgaagctcctgatgtgaatggggcggaacctcaggcatct
gaactccaaccagaaggggaagctggtactgtgggtagtaatcccaagctgtctgatggg
aacatagatcttgaagagggggaattggaagatatggacatcgcggacgatgatgttgtg
gttgtaaaggatgagctattagatgcttccgttcagcctgaagtcagtgttgcagctgta
cagactgtaattggttttgaggtcaagctggacaagggtattggggctgaaaatgcacca
aattatgtgtcaaacagcatctctgtcgaagaaagtccagcaagaggagttaaaagagct
cgtgtggaatcaaaggagccttcagttcgtgtcatctacagtgacttgacaagggaaagc
aaaagaaagcttatggaactgatgcaacattggtctcagtggcaggccagaaggcagcac
aaagtgaagcaggaagctgtggaagagatcttagaaagtggtgaagagacttattatccg
gcattacatgttggttccgagaaatcttgtgctgtgtcattttgggtggataaccaagca
agggagagtgctaccatggatgatgaatctgttccactgtatgatcgggaatttaccttg
ggctcaactccactgggtgattcatcaaacactgaaagcagggcagataaggatgattcg
cgctgcttcaattgtggttcttatagccatgctctgaaggattgcccaaagcctcgggac
aatgttgcaattagcaatgctcggaagcagcataatttgaaaagaaaccaatctaatgtt
aaccgcgtacagaaccgatattaccagaaaacacccggcaaatttgatgatcttaaagct
ggagtactgggacctgaaactagagagtgcctgggaattggggaaaatgacccccctcct
tggctgcataggatgcgtgaattaggttatcctccaggctacctagatgtggttgatgat
gaagacaaaccttctggtatcaccatatttggagatggtgaggtgaaactagagtacgag
gagggagagcttccagggcaaggcgaaccatccccacctcggaaaaggatgacagtggaa
ttccctggaataaatgcccccatcccagagaacggtgacccctggctgtggggcagcacc
cctccccagtcctctgcccaccaatactcatcggattcgagggattaccgtgatagagga
cctcctggtgctgatcattattcatcgagataccattccctcgaccatgggcagttgagc
ccaagcttggggaggtcacactcagagagggggtggagaagcccacctcgttacgataat
ctgccggcagatgacggtgcttggaccccacattcgtaccctagtaggcagttctcggga
cactacagctcgagctcggagatgtcgtcgcgccattacagggacagggacagggacagg
gacagggacagagacaggcatgacagcaggcactaccaccaccgcagataa
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