Panicum virgatum (switchgrass): 120656167
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Entry
120656167 CDS
T07260
Name
(RefSeq) cryptochrome-1-like isoform X1
KO
K12118
cryptochrome 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120656167
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Motif
Pfam:
FAD_binding_7
Cryptochrome_C
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
120656167
NCBI-ProteinID:
XP_039790127
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Position
1N:46809859..46813924
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AA seq
705 aa
AA seq
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MSASQSSMSGGGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPAYVWAPEEDGPYFP
GRVSRWWLSQSLKHLDASLRRLGASRLVTRRSADAVVALLDIVRSTGATHLFFNHLYDPL
SLVRDHRVKELLAAEGITVRSFNSDLLYEPWEVLDDDGCPFTMFAPFWNRCLCMPDPAAP
LLPPKKINSGDLSRCTSDELIFEDESERGSNALLARAWSPGWQNADKALTAFLNGPLIDY
SVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGEESCTLFLRSIG
LREYSRYLTFNHPCSHEKPLLPHLRFFPWVVNEAYFKVWRQGRTGYPLVDAGMRELWATG
WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDR
IDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPHPII
ELDEANSRLQDALLEMWELEAASRAAMENGMEEGLGDSSDVPPIDFPQELQMEVDRQPVQ
PTQTPMMAGRRREDQMVPSMTSSFIRAETELTADFGNISEDSRPEVPSNMHLQPRMEREE
TVDGGIGNGVRMNGNHQQQNLQNNTRRVLGVAPSVSEASSSWTGREGGVVPVWSPPAASG
HSDPYAADEADISSRNYLDRHPQSHTMMNWSQLSQSLTTGWEVDK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgtcgcagtcgtcgatgagcggcggcggggaggcgggggtgcggacggtggtg
tggttcaggcgggacctccgggtggaggacaacccggcgctggcggcggccgcgcgggcg
gccggggaggtggtgccggcctacgtgtgggcgccggaggaggacggaccctacttcccc
ggcagggtgtcccggtggtggctcagccagagcctcaagcatctcgacgcctctctccgg
cggctcggcgctagccgcctcgtcacccgccgctccgccgacgccgtcgtcgccctgcta
gacatcgtccgcagcaccggcgccacgcacctcttcttcaaccacctctacgacccactg
tcgctggtccgggaccaccgcgtgaaggagctgctggcggccgagggcatcaccgtgcgg
tccttcaactccgatctgctgtacgagccgtgggaggtcctcgacgacgacggctgccca
tttaccatgttcgcgcccttttggaacaggtgcctgtgcatgcccgaccccgcagcgcca
ttgctgccgcccaagaagatcaattcaggtgacttgtcgaggtgcacatccgacgagctg
atctttgaagacgagtccgagagggggagcaatgcgctgctggcacgggcctggtcaccg
ggatggcagaacgctgataaagcgcttacggctttcctcaatggcccgttgatcgactac
tccgtgaaccgcaagaaggctgacagcgcaagcacctccctgttgtctccgtacctgcac
ttcggtgagcttagtgtccgcaaggtcttccaccaggtccggatgaagcagctgatgtgg
agcaacgaaggcaaccacgctggcgaggagagctgcaccttgttccttcgctccattggc
ctgcgggagtactccaggtacctcaccttcaatcatccctgcagccacgagaagccgctc
cttccacacctcaggttcttcccttgggtcgtcaacgaggcatacttcaaagtctggagg
caggggaggaccggctaccctcttgtcgacgctggcatgagggagctctgggcaactggg
tggcttcatgatcgcatacgtgtggtggtctcgagcttttttgtcaaggtgctccagttg
ccatggcgctggggtatgaagtacttctgggataccttgctggatgctgaccttgagagt
gacgccctaggttggcagtacatttctggttccctccctgatggccgtgagcttgaccgc
atcgacaaccctcagtttgaagggtacaagtttgacccacatggggagtatgtccgacga
tggctaccggagctggcgaggctgccaaccgaatggatacaccacccatgggatgcacct
gagtctgtgcttcaggctgcaggagttgagctaggctccaactaccctcaccccatcatt
gagttagatgaagccaattccaggttacaggatgccctgttagaaatgtgggagcttgag
gcggcctctcgggctgcgatggaaaatggaatggaagaaggccttggcgactcctcggat
gtgccaccgattgacttccctcaagaattgcagatggaagtggaccgacaaccggtccaa
cctacccagacaccaatgatggcaggtcggaggcgagaagatcaaatggtgcctagcatg
acttcctcattcattagagctgaaacagaactcactgcggattttggcaacatcagtgag
gacagtaggccggaggtgccatcaaacatgcatttgcagcctcgaatggaaagagaagaa
acagttgacggtggcattggcaatggtgtgaggatgaacggcaatcatcagcagcaaaac
cttcagaacaacacacgccgggtgctaggtgttgctccatcagtttcagaggcatcgagc
agctggacaggcagagaaggaggggtggtaccggtctggtcaccaccggcagcttcagga
cattctgatccttatgctgccgatgaggctgacatttccagtaggaattatttggacagg
cacccacaatcacatacgatgatgaactggagtcaactctcgcagtcattgacaacaggg
tgggaagtggataaatga
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