Panicum virgatum (switchgrass): 120656246
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Entry
120656246 CDS
T07260
Name
(RefSeq) small nuclear ribonucleoprotein SmD1a
KO
K11087
small nuclear ribonucleoprotein D1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120656246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120656246
03032 DNA replication proteins [BR:
pvir03032
]
120656246
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
Sm proteins
120656246
U2 snRNP components
120656246
Complex B
U1 snRNP components
120656246
U4/U6.U5 tri-snRNP components
120656246
Complex C
U2 snRNP components
120656246
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
120656246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Gemin7
EBNA2_Core
BPL_C
Motif
Other DBs
NCBI-GeneID:
120656246
NCBI-ProteinID:
XP_039790217
LinkDB
All DBs
Position
1N:complement(47783166..47786114)
Genome browser
AA seq
114 aa
AA seq
DB search
MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTSGKPLGRGRGRGRGRGRGRGR
NT seq
345 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttgtcaggttcctgatgaagctgaacaacgagacggtgaccatcgagctcaag
aatggcaccgtcgtccacggaaccatcaccggtgttgatatcagcatgaatactcatctg
aagactgtgaagctcacactgaaagggaaaaatcctgttacccttgatcacctcagtgtg
agaggaaacaacatccgctattatatccttcctgacagcttaaacctggagactttgctg
gttgaggaaacaccaagggtcaaacctaagaagccaacttcagggaagcctttgggacgt
gggcgtggccgtggtcgtgggcgcggtcggggtcggggacgttga
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