Panicum virgatum (switchgrass): 120656313
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Entry
120656313 CDS
T07260
Name
(RefSeq) vacuolar protein sorting-associated protein 20 homolog 2-like
KO
K12195
charged multivesicular body protein 6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03250
Viral life cycle - HIV-1
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120656313
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120656313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120656313
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120656313
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
120656313
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120656313
Exosomal proteins of other body fluids (saliva and urine)
120656313
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Snf7
TINF2_N
DUF5069
Motif
Other DBs
NCBI-GeneID:
120656313
NCBI-ProteinID:
XP_039790300
LinkDB
All DBs
Position
1N:complement(48779704..48783311)
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AA seq
229 aa
AA seq
DB search
MGNIFVKKPKITDVDRAILTLKTQRRKLAQFQQQLEKVIEAEKEAARQLVQQKKRDRALI
ALKKKKAQEELLKQVDTWQMNVEQQLTDIELASKQKAVFESLKAGNAALKSIQNEINIDD
VQKLMDDTAEAKAYQDEINAVLGEQLSAEDEEAVMAEFENLEAQLAVESLPDAPVTEVRP
EEKMKAPADTEAASEDIDEVIELPDVPTKVPERPEAPEKTKVLEEPLPA
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atggggaacatcttcgtgaagaagcccaagatcacggacgtcgacagggccatcctcacc
ctcaagacgcagcgccgcaagctcgcccagttccagcagcagcttgagaaggtaatcgaa
gcagaaaaggaagctgcacggcagttggttcaacagaagaagagggacagagctttgatt
gctctgaagaagaagaaagctcaggaagagctgttgaaacaagttgacacatggcaaatg
aatgttgaacaacagctgacagacattgaactagcaagtaaacaaaaggctgtatttgaa
agcctgaaggctggaaatgctgcccttaagtctatacagaatgagataaacattgatgat
gtccaaaagctgatggatgatacagccgaggctaaggcttatcaagatgaaataaatgct
gttctaggcgagcagctatcggctgaggatgaagaagctgttatggctgagtttgagaat
ttggaagctcagcttgccgtcgagtctttgccagacgctcctgttactgaagtacggcct
gaagagaaaatgaaagcaccagctgacacagaagctgcatctgaggacattgatgaggtt
attgagcttcctgatgtgcctacgaaagtgccagagagaccagaagctcctgaaaaaacg
aaagttttggaagagccgctacctgcgtag
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