KEGG   Panicum virgatum (switchgrass): 120656344
Entry
120656344         CDS       T07260                                 
Name
(RefSeq) RNA-binding protein P-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120656344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120656344
   03041 Spliceosome [BR:pvir03041]
    120656344
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120656344
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120656344
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120656344
SSDB
Motif
Pfam: RRM_1 PreAtp-grasp
Other DBs
NCBI-GeneID: 120656344
NCBI-ProteinID: XP_039790340
LinkDB
Position
1N:49155014..49156601
AA seq 416 aa
MGRKRKRKRPREVEPAAERVHRETAGGEVDCEDFVATNPPMAEPSAAGEREEASEAAEED
IGELLEPFTRDELLDLLTDACLRDPALLSRLAASAASDAAHRRLFAHGLGPGATSAALAA
AFAPFGDVDECHAVADRATGRCRGYGLVTFRRRSAARRALADSSKRVDGRPVACQLAALG
PVAQSSCSDRKLFVDNVPERAAHDDLRGFFSKFGEIEEGPLGADRNTGLFRGYAIFFYKT
PEGLRKALEEPNKVFDGCELQCRRAYKVTNRKHAAAAPVDTGVQSNGGAAIAAVLPSVQA
KDLALTSKQSVLSSNQLVGLTAEGSSSAPATVRQNVPAGGAGILGAAPVAPSLIHGTSST
PPSHCGAATGHVGLGDTARAGTSTIEPIIGAKNSLGASHPGRLSARPGLIQHYLGR
NT seq 1251 nt   +upstreamnt  +downstreamnt
atgggtcggaagcggaagcggaagcggccccgcgaggtcgagccggcggcggagcgtgtc
catcgggagaccgccggcggagaagtcgactgcgaggacttcgtggcaacgaacccacca
atggcggaaccatcggcggccggcgagcgagaggaggcgtcggaggcggcggaggaagat
attggtgagctactggagccgttcaccagggacgagctcctggacctcctcaccgacgcc
tgcctccgcgaccccgccctgctctcccgcctcgcggcctccgccgcctccgacgccgcg
caccgccgcctcttcgcgcacggcctcggcccgggcgctacctccgccgcgctggccgct
gcgttcgcccccttcggcgatgtcgacgagtgccacgccgtcgccgaccgcgccacgggc
cgttgccgaggctacggcctcgtcaccttccgccgccgctccgccgcgcgccgcgctctc
gccgactcttccaagcgcgtggacggccggcccgtcgcctgccagctcgccgccctcggc
ccggttgcacagtcctcctgctccgaccgcaagctcttcgtcgacaacgtgcccgagcgc
gccgcgcacgacgacctgagggggttcttctccaagttcggcgagatcgaggaggggccc
ctcggcgccgaccggaataccgggctgtttcgaggctacgccatcttcttctacaagacg
cccgaggggctcaggaaggccctcgaggagcccaacaaggtgttcgacgggtgcgagctc
cagtgccggcgcgcatacaaggtgaccaataggaagcatgctgccgccgcacccgtggac
acaggtgtccagagcaatggtggcgccgctattgccgcggtcttgccctctgtccaggcc
aaggaccttgcattgacatccaagcagtcggtgctttcatcgaatcagctggttggtctg
acggccgagggaagcagttcagccccggccaccgttcgtcagaatgtgcctgcaggtggc
gctggtatccttggtgcagctcctgtggccccttcgctgattcatggcacatcaagcaca
ccaccaagtcattgtggcgctgcaactgggcatgttgggttgggtgacactgctagagct
ggtacttcaaccattgagcctataattggggcaaaaaattccttgggtgcttcacatcct
ggccgattgtcggctaggcctggcttgatacagcattacctgggaagatag

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