Panicum virgatum (switchgrass): 120656417
Help
Entry
120656417 CDS
T07260
Name
(RefSeq) nuclear cap-binding protein subunit 2 isoform X1
KO
K12883
nuclear cap-binding protein subunit 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120656417
09122 Translation
03013 Nucleocytoplasmic transport
120656417
03015 mRNA surveillance pathway
120656417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120656417
03041 Spliceosome [BR:
pvir03041
]
120656417
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
120656417
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
Cap binding complex
120656417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
DUF5721
Motif
Other DBs
NCBI-GeneID:
120656417
NCBI-ProteinID:
XP_039790427
LinkDB
All DBs
Position
1N:complement(49926177..49929705)
Genome browser
AA seq
285 aa
AA seq
DB search
MASLFKDPSKLSAYRDRRFPGTQEEYEAALQASTTVYIGNMSFYTTEEQAYELFSRAGEI
KKIIMGLDKNSKTPCGFCFVLYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG
RGRSGGQVRDEYRTDYDPGRGGYGKMVQKELEAQRELVDYGGSFQPNAPPPYERGERKRG
YGDSYRNDRGGNTLNLFSCLCFFFQSTYDCHQITNGNATGMMIGLRLRGPGERLTQIKRR
RILGSERKATLMRKTTTMTRGAVAEPVEQLLLACSCSDAQLLQKN
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccctcttcaaggacccgagcaagctgtcggcgtacagggaccggcggttcccg
gggacgcaggaggagtacgaggcggcgctgcaggcgtcgacgacggtgtacatcgggaac
atgtccttctacaccacggaggagcaggcctacgagctcttctcccgcgccggcgagatc
aagaagatcatcatggggctcgacaagaactccaagaccccctgcggcttctgcttcgta
ctgtactactccagggaggatgctgaagatgctgtcaaatatattagcggaacaatgctt
gatgatcgtccaatccgtgttgattttgattggggctttgaagaaggcaggcagtggggc
cgtggacggagtggcggtcaagtcagagatgagtaccggacagattatgatccaggaaga
ggtggttatggtaagatggttcagaaggagctagaagcacaaagagaattagttgactat
ggtggatcttttcaaccaaatgctccacctccatacgagagaggcgaacgcaagagagga
tatggagactcgtacaggaatgacagaggaggtaacacattaaacttattctcatgttta
tgtttttttttccaatcaacttacgactgtcaccagattaccaacggaaacgctaccgga
atgatgatcggcctgcggctgaggggtccaggagagcgcctgactcagatcaagcggaga
agaatcctaggttccgagagaaaggcgactctgatgaggaagacgacgactatgacaaga
ggcgccgtcgctgaacctgtggaacaattgttgcttgcatgcagttgttctgatgcccag
ttactgcagaagaattga
DBGET
integrated database retrieval system
