Panicum virgatum (switchgrass): 120656465
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Entry
120656465 CDS
T07260
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial-like
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120656465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120656465
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120656465
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
120656465
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
120656465
Transfer RNA biogenesis [BR:
pvir03016
]
Prokaryotic type
tRNA degradation factors
120656465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
S1_RRP5
Urease_gamma
Motif
Other DBs
NCBI-GeneID:
120656465
NCBI-ProteinID:
XP_039790492
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All DBs
Position
1N:complement(50763433..50772050)
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AA seq
971 aa
AA seq
DB search
MSMAAAASLRSLARRRPRLRLPVAPLAVPGARAAFLSGAAEEAAADAAAAPPAPGRKVLE
SFREEFEIGGRSVAFETGKMARFANGSVVISMEDTNVLATVAAAKSSEPVRDFLPLTVDY
QEKQYAQGVIPTTYMRREGVPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVLSLDGK
QDPDLMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLIYACSR
DKTLMIDVQAREITERDLQAGMKLAHSEAIKCIDPQIRLAKRAGKVKKEYKISLISDTSY
EKIRTLSEAPIEEVFTDSSYGKFERGEALEKITQSVKAKLEEENDEDSLKFLSKAVDTVR
KQVIRKRIIEEGLRVDGRQLDEVRPVYCESNTYPVLHGSALFSRGDTQVLCTVTLGVPGD
AQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPESDF
PYTVRVNSEVMASDGSTSMASVCGGSIALMDAGIPVREHVAGVSVGLVSQVDPTTGDISN
YRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPARKARNQIL
DHMDQEISTARAMNDGTAPRLATLSFSSDSLRKLLFHRKTIERETGARVSVSDGTVTIVA
KTQPIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLHVSELSHEP
VSKVSDIVTVGQVLSLMCIGQDVRGNIKLSLKATLPQPRKKKDLESQDPLPSQEVGWAAV
ENMPSLGADAEPSSSKQEEAPAFSTPSVIIRSEADCDAQDAVNGPKKRPKVAKSSPRPYK
APSACQEVRTATAKKAPGATKKTKKVKIKESGSDGLESSGSEVPEQTASNTLDLKQSPVN
FQSGSMKLGDVVTSKVYQIRAFGLVLELSDGARGMHKFEENGQKEFEVGQELLVKCRSFN
AKGIPVFSLLD
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggcggcggccgcctccctccgctccctggcgcgccgccggccccgcctccgc
ttgcccgtggcgccccttgcggtccctggtgcccgcgcggcattcctctccggcgcggcc
gaggaggcggccgcggatgcggcggcggcgccgcctgccccgggccggaaggtgctggag
agcttccgcgaggagtttgagatcgggggccgctccgttgcattcgagacgggaaagatg
gcgcgcttcgcgaacggctccgtggtgatctccatggaagacaccaacgtcctcgcaacc
gtcgccgctgccaagtcctccgagcccgtccgggactttctcccgctaactgttgactat
caagaaaaacaatatgctcaaggtgttattccgacaacatatatgcgcagggaaggtgtc
cctaaggaaagggaacttctgtgtgggcgtataattgatcgaccaataaggccattgttt
cctcctggcttttaccatgaagttcagatcatggtaaatgttctttcattggatggaaag
caagatccagatttgatggctgcaaatgcctcttcagctgcactgatgctatccgatata
ccttggaatgggccgattggagtaatacgtgttgggagaattgatgggaattttgtccta
aatcctacagtcgatgagctaggtttgagtgatctcaatcttatttatgcatgttcacgg
gataaaactctaatgatagatgtgcaagctcgtgaaataaccgaaagggatcttcaggca
ggaatgaagcttgcacactctgaggcaattaaatgtattgacccccaaataagattggct
aagcgagctggcaaagtgaagaaagagtacaagatatctctgatttcagatacatcctac
gagaaaattagaacattatcagaagcaccaattgaagaagtcttcactgattcatcatat
ggcaagtttgagcggggagaagctttagagaaaattacacaatctgtgaaagcaaagctt
gaagaagaaaatgatgaggacagcttgaagtttctgtccaaggcagttgatacagtgaga
aaacaggttattcgtaaaagaataattgaggagggacttagagtagatggtagacaactt
gatgaggtcagaccagtgtattgtgaatccaatacatacccggtattacatggctctgcc
ctgttttcacgtggagatactcaggttctatgtacagttacccttggtgtccctggtgat
gctcagcgactggattcaattgttggtcctccaacgaagcgtttcatgcttcactatagc
tttccaccattttcaataaatgaagttgccaaacgtgggggcctgaatcgacgggaagtt
ggacatggcactcttgcagagaaagcattgctcgctgtgcttcctccagaaagtgatttt
ccatatactgttcgggtaaattcagaagtcatggcctctgatggttcaacatcaatggca
tcagtatgtggaggaagtatagccttgatggatgctgggatacctgtaagagaacatgta
gctggtgtttcagttggtcttgtaagtcaagtggatccaactactggagatatttctaat
tatcgtatcttaacagatattttgggtcttgaagatcatttgggtgacatggacttcaaa
attgcaggaacaagaaagggcattactgctattcaactggatataaaacctgctggaata
ccattggacataatttgtgaaagtttagagcctgcacggaaggctcgaaatcaaattctt
gaccacatggaccaggaaataagtaccgcacgtgctatgaatgatggaactgcccctcga
ttagctacactgagcttcagcagtgattctcttaggaaactgcttttccacaggaaaaca
attgagcgagaaacaggtgcacgggtatcagtcagcgacggtacagtcactattgttgct
aaaacccaaccaattatggataaagctattgagaaggttgagtttctcgtgggccgtgaa
attgaagttggccgaacatacaaaggaattgtttcctcaattaaggagtatggcgctttt
gtggagttcaatggtggacagcaaggccttcttcacgtttcagagttgtcacatgaaccg
gtatcaaaagtctccgatattgtaactgttggccaagtgctatctttgatgtgtattgga
caggatgtgaggggtaacattaaactttcacttaaggcaaccttaccccaaccacgtaag
aagaaggatttggaaagtcaagatcctttgccaagtcaagaagtaggctgggctgctgta
gagaacatgcccagcttgggtgctgatgctgagccatccagtagtaaacaggaagaggca
cctgcattttcgactccttcagttataattcgaagtgaggctgactgtgatgctcaagat
gctgtaaatggtcctaagaagaggccaaaggttgcaaagtcatctcctagaccatataaa
gcaccaagcgcatgtcaggaggttaggacagctactgctaagaaagctccaggtgctacc
aagaaaactaagaaagtaaagattaaggaatctggaagtgatggcctggaatccagtggg
tcagaggttccagaacagactgctagcaacactcttgacctgaagcagagtcctgtgaac
ttccaatctggatctatgaagttgggtgatgtagttacatcaaaggtctaccagattcga
gcttttggactagtacttgagctgagcgatggagcacgtggaatgcataaatttgaggag
aatggtcaaaaggaatttgaagttggacaggaactacttgtgaaatgtcgaagtttcaac
gccaagggaattccagtcttctcattgctggactag
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