Panicum virgatum (switchgrass): 120656538
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Entry
120656538 CDS
T07260
Name
(RefSeq) CLIP-associated protein-like
KO
K16578
CLIP-associating protein 1/2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120656538
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pvir04812
]
120656538
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
120656538
Cytoskeleton proteins [BR:
pvir04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
120656538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
Cnd1
HEAT_EF3_N
HEAT
XMAP215_CLASP_TOG
HEAT_EZ
INTS1_R4
Adaptin_N
Sec7-like_HUS
Dopey_N
HEAT_DAAF5
MMS19_C
Motif
Other DBs
NCBI-GeneID:
120656538
NCBI-ProteinID:
XP_039790599
LinkDB
All DBs
Position
1K:55623137..55631845
Genome browser
AA seq
1340 aa
AA seq
DB search
MAQPHRPLKPAPPLRVLAPPSRRIADRFSSPRRSTTTPSNPRAAAGAMASSAAVARLREL
ATAPGAGLDGPGAAALAGCCAELLRPGGGDAEAAREALEALCAAAGGGAMRRHADGLAPL
VVARLGDGDAAVRETARRFLVLLMEMKEINARTESTQPNSCMSDSDDQHVHCATIKMESY
SPARKGSKEKISTRDISLLAGEGDMTKKLVEPIKVFSEKDLLREIEKVVYTLQPDNEWSI
RITAMQRVEGLVLGGAADYSAFPMLLKQLVTPLITQLLDRRSSVVKQACHLLNFLSKELL
RDFEPYAELLIPVLLKNIVITILVIAESADNCIKEMLRNCKVARILPRIIEFAKNDRSAV
LRARCCEYAILMLEYWVDTPEIQRSADLYEDLIKCCIADATSEVRSSARACYRMFSRIWP
ERSRQLYSSFEPSRQKMINDEDAVTHQRHLPPVVSVKLRQPQPSSCTPAVTDKVVKVDSG
TSFCVGDLQPSQILCLEYDDMTSKCQDQGSKDDTSAIGSSLEDKVTLGKEEITNRDTDKC
DSDNNAGFSSSSCDLPSGTPFATGAPSEMPLTDAAVVTIVQDKAECAPNDEHMTSHQVQG
PEDPFELTSMSPSLRGSGNLLKQNPIDVSSDAGSGGKLGPQQEWKHCIGTTKKTAASKEP
RNSYTPNFRRPLLSKQMTNWFYASTKSDLDEKKLILGEMISNMNVPSSLTEALSLGFNPR
SDWMMKVYAFDFLRQCLLERGPKGIQEVAQNFEKVMRLVCRYLDDPHHKVAQAALSSLAE
IMPAFKKPFEHYLDKTLPHIFSRLSDPKESIKKQCLAILKLASELYSIDSLLPALLRSLD
EQKSPKSKLAVLEFANASFVKCTINSEIYSSSSFLKPWFGKLALLFKDKSKKLKEVAVVG
FSSIYSHYDSASMLSFLVSLSMEEQKRLRRAMKLLIPTIESDLEEFLQQRRHKQKASSFD
IFTAKSPLHPASQSAKSPMHPAYRSAKSPLHPTYQYAKSPLHPTYQSAKSPMHPAHPSNS
VKTDDCFSSALQCLPNMSLEVQERRTERIKFESSSEYYGDKAEMMDKKSSTMKPRNGLQR
RIDFSMISDNTMQNASRDGQNMKVFDKPNASELSMNIRNDEITGDDCQDHKEVVRQLEEV
SETNRHCVPTKNLDQMSSSLLEMLYDPDVTTRELALSLLVEILEKHRKAMESCVEILIVK
LLHATKDAALKVVNQAHICLTTVVTQFDPMRCLGAISSQLACQDEKILIISINSLSKLVN
RLSQENLMAHLSTFLPALLDAFENHSPYVRKAVMVCVVDTYLKLGPSLLPYLEGLDSAQL
QLVTTYASRLSQARFIAADG
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atggcacagccacaccgccctctaaaacccgcacctccgctccgcgtcctcgctcctccc
tcgcgccgaatcgccgatcgcttctcctctccgcggaggtccaccaccaccccatcaaac
cctcgcgccgctgcgggcgcgatggcttcctccgccgcggtggcgcggctgcgggagctg
gccacggcgcccggcgcggggctcgacggccccggcgcggccgcgctcgccgggtgctgc
gcggaactcctgcgccccggcggcggcgacgccgaggccgcgcgcgaggcgctcgaggcg
ctttgcgccgcagccggagggggcgcaatgcggcgccacgccgacgggctcgccccgctg
gtcgtcgcgcggcttggggacggcgacgcggcggtgcgggagaccgctaggaggttcctc
gtgctgctcatggagatgaaggagataaatgcaagaacggaaagtacacaaccaaattct
tgcatgtcagactcagacgatcaacacgttcattgtgcaacaatcaagatggaatcttac
agtccagcaagaaaaggctccaaagaaaaaatcagcacaagagacatctcacttcttgca
ggagaaggagacatgacaaagaaattagttgaacctataaaggttttctctgagaaggac
ctactaagggaaatagaaaaagtagtatatactttgcagccagataatgagtggtcgatc
cggataactgcaatgcaaagagtggaaggcttagtacttggaggtgctgcagactattct
gccttccccatgctcctaaaacagctcgtgacccctctaataactcagcttctggatagg
agatcaagcgttgtaaaacaggcatgccatttactaaacttcctatcgaaagagctacta
cgtgactttgaaccatacgcagagctgctcatcccggtccttcttaagaacatcgtaatc
accattctcgtaattgctgagtctgctgataactgcataaaagagatgctaaggaactgc
aaggtggctcgtatattaccaaggattattgaatttgcaaagaatgatagaagtgccgtt
cttcgtgccaggtgttgcgaatatgcaatactaatgctagagtactgggttgatactcca
gaaatacagagatcagctgatctgtacgaagaccttatcaagtgttgtatagcagatgca
actagcgaggttcggtcaagcgctagggcatgctacaggatgttctcaaggatatggcca
gagcgttcacgccagttgtattcatcttttgaaccatctagacagaaaatgataaatgat
gaagatgctgtgacacatcaaaggcatctgcctccagtagtaagtgttaaactaaggcaa
cctcaacctagttcttgcactccagctgtaacggacaaagttgttaaggttgattctggg
acatcattttgtgttggagacttgcaaccatcacagatactatgcctcgagtatgatgat
atgacctcgaaatgccaagatcaaggcagtaaggatgacacttcggcaattggaagttct
ttggaagataaggtcacactgggaaaggaagaaatcacaaacagagatactgataaatgt
gattcagacaacaatgcaggtttcagttcatcgtcttgtgacctaccatctggtactccc
tttgcaacaggggcaccttcagagatgccattaaccgatgcagctgtcgtaacaattgtt
caagataaggctgaatgcgctccaaatgatgaacatatgacttctcatcaagttcaagga
ccagaagatccttttgagttgacgagcatgtcacctagcttgagaggatcagggaacttg
ctaaagcaaaatcctattgatgtaagctctgatgccggatcaggcggaaaactaggtcct
cagcaggagtggaagcattgtattggcacaactaagaagactgctgcttcgaaggagcca
cgtaatagttacactcctaacttccggcgaccactgttaagtaagcagatgacaaattgg
ttttatgccagtaccaaaagtgatttagatgagaagaaactcattttaggtgaaatgatc
agcaacatgaatgtgccctcatctctcacagaggcactttctttaggttttaacccaagg
tcagattggatgatgaaggtatatgcatttgatttcttaaggcaatgtttgttagaacgt
ggaccaaaaggcattcaggaggttgcacaaaattttgagaaggttatgagacttgtttgt
cgatatctggatgatccccatcacaaagtggcacaggctgctctctcatcactcgctgag
atcatgccggcttttaagaaaccttttgaacattatctcgacaagacactgccccatatt
ttctctcggttaagcgatccaaaggaatcaattaagaagcagtgcttggcaattttgaaa
cttgcaagtgaactgtattccattgattctctcttacccgccttacttcgttcactagat
gagcagaaatctccgaagtcaaaactggcagttctcgagtttgcaaatgcctcttttgta
aaatgcacaatcaattctgaaatctattctagcagcagtttccttaagccatggtttgga
aaactcgcccttttgtttaaggataaaagcaaaaaactgaaggaggttgcggtggttggt
ttctcatcaatttattcccattatgattctgcatcaatgttaagctttttggtcagcttg
tcaatggaagaacagaagcggctaagacgggcaatgaagctactaataccaacaatagaa
agtgatttagaagagttcttgcagcaaaggagacataagcaaaaggcttcatcttttgat
atctttactgcaaaatcaccgcttcatcctgcatctcaatctgctaaatcaccaatgcat
cctgcatatcgatctgctaaatcaccgcttcatcccacataccaatatgctaaatcaccg
ctgcatcccacataccaatctgctaaatcaccgatgcatccagcacatccatctaattct
gttaagactgatgattgtttcagttctgcactccagtgtctcccaaatatgtctttggaa
gtgcaggagcgccgtactgagaggatcaagtttgaatccagtagcgaatattatggtgac
aaagctgaaatgatggataagaagtctagtaccatgaagccaaggaacggtctccagaga
agaattgacttcagtatgatatcagataacacaatgcagaatgcaagcagggacggtcag
aatatgaaggtatttgataaaccaaatgcaagtgaactgagcatgaatatcagaaatgat
gaaatcacgggtgatgactgccaggatcataaggaggtggtgaggcaattggaagaagtt
tcggagacgaacagacattgtgttcccaccaagaatttagaccagatgtcatcttcactt
cttgagatgctttatgatccagatgtaaccaccagagagctagccctttctctattagtt
gaaattcttgaaaagcacagaaaggcaatggagagctgcgtcgaaattctcatagttaaa
ttactgcatgcaaccaaagacgctgccttgaaggttgtaaatcaggcccatatctgcttg
acaactgtggtcacacaatttgacccaatgagatgccttggggccatatcttctcaatta
gcctgccaggatgagaaaattcttattatcagcatcaatagtttgagcaagcttgtgaat
cgattgtcacaggaaaacctcatggctcatttgtcaacatttcttcctgcactcctggat
gcttttgaaaaccacagcccatatgtccgcaaggctgtgatggtgtgcgtggtggacaca
tacctgaagctggggccgtcgctgctgccgtatctggagggcttggacagcgcgcagctg
cagctcgtaaccacctacgccagccggctgtcccaggcaagattcattgcggcggacggc
tga
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