Panicum virgatum (switchgrass): 120656539
Help
Entry
120656539 CDS
T07260
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120656539
03015 mRNA surveillance pathway
120656539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120656539
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120656539
mRNA cycle factors
P-body specific factors
120656539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
PsiA
Motif
Other DBs
NCBI-GeneID:
120656539
NCBI-ProteinID:
XP_039790596
LinkDB
All DBs
Position
1N:complement(51852714..51863741)
Genome browser
AA seq
1192 aa
AA seq
DB search
MDSVQNESRTDTKQDDEARQSKQDDEEARLEEHKKIIDQKTSLRQSNLNPERPDANYLRT
LDSSIKRNTTVIKKLKTINDEQKDGLMDELKSVNLSKFVSEAVSYICEAKLRSADIQAAV
QVCSLLHQRYKDFSPCLIQGLLKVFFPGKSGDDLDADKTSRAMKKRSTLKLLIELYFVGI
VEDASIFVNIIKDLTSAEHLKDREATQTNLSLLSTFARQGRFLVGLQSHGQEAYDEFFKD
LNVTADQKFFKKALNSYYDAVAELLQSEHASLRLMEAENAKVLSAKGELSDENTASYEKL
RKSFDQLLRGVSSLAEALDMQPPVMPDDGNTTRVTTGTDVSPSSGKESSALEPIWDDEDT
KAFYESLPDLRAFVPAVLLGEVEPKSNEQHAKGREQSSESTSEQETELHDNAQTCAPEHQ
LEVKVDDGVKDSEDKDKDRGKDGEKEKSKEKDLDKKNEREKEKVRALDGASLDNLLQRLP
GCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDVP
SMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFSH
HNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKP
PERSARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPWAECQQYLLKCFLKVHKG
KYSQVHLIALLTASLSRHHDDFAVAVVDEVLEEIRFGLELNDYGMQQRRLAHMRFLGELY
CYKLIDSSVVFETLYLIIVFGHGTPEQDVLDPPEDCFRIRLIIILLHTCGHYFSKGSSKR
KLDKFLLHFQRYIMSKGPIPLDIEFDIQDLFSDLRPNMSRYSSIEELNAALIELEENERS
APLEKAENERHSDNESQKRQPRDGAASVNGQSATNGVEENGKDHEVADSESYSGSGNIDG
QEDEDILSEDKSNDGSDNEGDDEDDGIPVGSDEDENVEVRQKVMQVDLKEQEDFDRELKA
LLQESLESRKSEARSRLPLNMMVPMNVLEGSKDQRATESESGEETVDEEGGNVGSSKVRV
KVLMKKGHKQQTKQMLIPADSSLVLSTKQQEAAELEEKQSIKRRILEYNEREEEELNGGA
SQMGNWGQGASTTSSIRSGGRGSWDGPTRGGGRQRHHIAGSGGFYHSYGRRR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgttcagaatgagagccgaactgacaccaagcaagatgatgaggcccgccaa
agcaaacaggatgatgaggaggcccgtcttgaagaacataaaaaaattattgatcaaaag
acttccctccgccagagcaacctgaatcctgaaaggcctgatgcaaactacctgagaact
ctggactccagtatcaagcgaaatacaacagtgataaagaagctgaagacaataaatgat
gaacagaaggatgggctaatggatgagttaaaaagtgtgaatttgagcaaattcgtcagt
gaagcagtttcttatatttgtgaggccaaacttcgctccgctgatatacaagctgcagtt
caggtttgctcgctgcttcatcaaagatacaaggacttctctccttgtcttatacaaggt
ctactgaaggttttctttcctggaaaatctggagatgatttggatgcagacaaaacttca
agagccatgaagaagagaagcacattgaaacttctgattgaactgtactttgttggaatt
gttgaagatgctagcatatttgtaaatatcataaaagatcttacatcagcagaacatttg
aaggaccgtgaagcaactcagacaaatttgtctctcctatccacttttgctcgtcaaggg
aggtttcttgtagggctacagtctcatggtcaagaagcttacgatgaattctttaaggac
ttaaatgttacagctgatcagaagttctttaagaaagccttgaactcttactatgatgct
gtagctgaactactacaatcagaacatgcgtctcttcgtctaatggaggcagagaatgca
aaagttctaagtgccaaaggtgaactaagtgatgagaacacagcctcatatgagaaactc
aggaagtcttttgatcagttgctacgtggtgtatcctcgctggctgaagctcttgacatg
cagcctccagtgatgccagatgatgggaatacaacgagggttactacaggaactgatgtc
tcgccgtcttctggaaaagaatcatccgcactggaacctatttgggatgatgaagatacc
aaagctttttacgagtctttacctgatctcagagcattcgtgcctgctgtattgttgggg
gaggttgaaccaaagtcaaatgagcaacacgctaagggccgtgagcaatctagtgaatcc
acttcagaacaagagactgaacttcatgacaatgctcaaacttgtgcccctgaacatcaa
ctggaagttaaagtagatgatggagtcaaagatagcgaggacaaagataaagatagggga
aaagatggagaaaaggaaaaatctaaggagaaggatctggataagaaaaatgaaagagag
aaagagaaagtaagagccttggatggcgcaagtttggacaaccttctgcaaaggttgcct
ggatgtgttagccgtgatcttattgatcaattgacggttgagttttgctacctaaattct
aaagcaaatcgaaagaaacttgtgcgtgccttattcaacgtcaataggacttcactggaa
ctgttgccttactattctcgtttggttgcgacactatcaacttgtatgaaagatgttcca
agtatgctactctctatgctggaagaggagttcaactttttaataaataagaaggatcaa
atcaacattgaaacaaaaataaaaaacataaggtttattggggagctgtgcaagttcaag
atggctcctccagctcttgtttttagctgtttgaaggcctgcctagatgatttcagtcat
cataacatcgatgtagcctgcaaccttctcgagacttgtgggcgttttttgtatcgctca
cctgaaactacaattcgcatggctaacatgctggagatactgatgagattgaagaatgtc
aagaatttggatccacgtcacagtacacttgtagaaaacgcctactacctttgtaaacct
ccggaaaggtctgcacgaatctcaaaagttcggccacctttgcaccaatacataagaaag
ttgcttttctcagatcttgataaatcgagtgttgaacatgttttgcgccaactacgcaag
ttaccttgggcagaatgtcaacaataccttttaaagtgcttcctaaaggttcacaaagga
aagtacagccaagttcatctgattgctcttctcactgctagcctcagccgccatcatgat
gactttgctgtcgcagtggtagatgaggttttagaagagataaggtttggattggagttg
aatgactatgggatgcaacaaaggcggcttgctcacatgcggttccttggggagctatac
tgctacaagcttatagattcatcagttgtatttgagacactgtaccttatcattgtgttt
ggtcatggaactcctgaacaagatgtgttggatccaccagaagactgcttcaggatcagg
ttgatcattatacttttacatacctgtggtcactacttcagtaagggatcttcaaaaagg
aagctcgacaaatttttgctacactttcaaagatacattatgagtaaagggcccatacca
cttgacatagagtttgacattcaggatttattttctgacctccgaccaaacatgtctagg
tattcatcaattgaagaattaaatgctgcattaatcgagctcgaggaaaatgaacgttca
gctccattagaaaaagctgaaaatgaaagacactcggacaatgaatctcagaaaaggcag
ccacgagatggtgctgcatctgtgaatggtcaaagtgcaacaaatggagtcgaggaaaat
ggcaaggatcatgaagtagcagacagtgagagctattcaggcagtggcaacattgatggg
caggaagatgaggatatattatctgaggataaatcaaatgatggctcagataatgaaggt
gatgatgaagatgatggtattcctgttggttctgatgaggacgagaatgttgaggttaga
cagaaagtcatgcaggttgatctgaaggagcaagaagattttgatcgagagctgaaggcc
cttcttcaggagagcttggagtcgcgtaaatcagaggctcgttcaaggctccctttgaac
atgatggtaccgatgaatgtcctcgagggttcaaaagaccaaagggccacagaatccgag
agcggggaagaaacagtggatgaagagggtggcaatgttggtagcagcaaggtgcgtgtt
aaggtgctgatgaagaaaggtcacaaacaacagacgaagcaaatgttgatccctgctgac
agctcactcgtgctaagcacaaagcagcaagaagctgctgagcttgaggagaagcagagc
attaagaggaggatccttgaatacaacgaaagggaggaagaagagctgaacggaggagca
tcgcaaatggggaattggggtcaaggagctagcactactagcagtatcagatcaggtgga
cggggaagctgggatggtcccacgcggggaggtggccggcaacggcaccacatcgcgggt
tcaggtggtttctatcacagttatggcagaagaagatag
DBGET
integrated database retrieval system
