Panicum virgatum (switchgrass): 120656589
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Entry
120656589 CDS
T07260
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120656589
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120656589
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120656589
Protein phosphatases and associated proteins [BR:
pvir01009
]
HAD phosphatases
Fcp/Scp phosphatases
120656589
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120656589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
NIF
Motif
Other DBs
NCBI-GeneID:
120656589
NCBI-ProteinID:
XP_039790663
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All DBs
Position
1N:52640828..52650240
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AA seq
934 aa
AA seq
DB search
MFKSMVYYGNTSIGEVEVWPKGEASAGLAVAAWAREIRVDRLSPPSERCPPLAVMHTVAV
DARCLVMESRPPAGTDVAPLPLVAMHAACLRDNKTAVVPLGDEELHLVAMTSRRNLTNHA
CFWGYRLPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTSRSFEDRIDALQRKLNNETDP
QRRNGMLSEVKRYQDDKSILKQYIEGDQVCDDGKVYKAQPEVVPPLSDNQQPMTRPIIRL
QDKNIILTRINPLIRDTSVLVRLRPAWVDLRSYLIARGRKRFEVYVCTMAERDYALEMWR
LLDPDSRLINSVQLHDRMVCVKSGLKKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSR
VHVVPAFTPYYAPQAEANCSIPVLCVARNVACNVRGSFFKDFDEGLLPRISNISYEDEND
ISSAPDVGNYLIAEDENVAAVNGNRDALPFDGMADAEVERRMKEASGNSQAFHPTVASFV
MPMAPAQNLVSSSVAPVAPPLGMTPPPFNQPVVQPGFSDPLQGSPAREEGEVPESELDPD
TRRRLLILQHGQDTRDPTPPLPAIPPVQVPVPPVQPHGNWFPTEDGINPSNLNRGSAGFT
VQSDSMFYEKKQPPHPSFFHGGDSPMSSDRFSYQNQRFSSQLPHTEDHNMLQNHGPPKYI
AFSGEELSARHVPSRRNNQLESGRHFAQYAGTSAGILEGITLKCGSKVEYRSTLCDTPEL
QFSIEVWIVGEKIGEGIGRTRREAQGQAAEMSLRNLAHKYLSSDPNKMTDLKENGFGSNR
NYFGYSGNTRDDMLPVSSTSEESRFMKMEDNNSQKTGGSVAALKELCTIEGYNLNFQARP
SPPDGSLGKESYAQVEVGGQILGKGVALTWEEAKIQAADEAIVTLRSMLGQLGHKRSGSP
RSLAPNFNKRFKPDFPRVQRVPYGTYSRIEGHVP
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagtcgatggtttattacgggaacacctcaatcggagaggtggaggtgtggccg
aagggcgaggcgagcgccggcttggccgtggcggcgtgggcacgagaaatccgcgttgac
cgcctttccccgcccagcgagcgatgccctccgctcgccgtcatgcacacggtggccgtc
gacgcccgatgcctcgtcatggagtccaggccgcccgccggcaccgacgtggcgccactg
ccgctcgttgccatgcacgccgcttgcctcagggacaacaagaccgcagttgttcctcta
ggagatgaagaattgcatttagttgcgatgacgtcgagaagaaacttgacaaatcatgca
tgtttctggggctatagattgccatttggcttgtacaattcttgcttgaccatgttaaat
cttcgatgcctgggtattgtgtttgacctcgatgagacattgattgttgccaatacatca
cggtcttttgaggacagaattgatgctcttcaaagaaagctgaataatgagacagaccca
cagcgtagaaatggtatgctatcagaggtcaagaggtaccaagatgataagtccatccta
aagcaatatatagaaggtgatcaggtctgtgatgatggaaaggtgtataaagcgcaacct
gaggttgttccaccattgtctgataaccagcaaccaatgacacgtccaattataagatta
caagataaaaacattatcttgacaagaataaatcctctgataagggatacgagtgttctc
gtccgtttaaggccagcctgggtggatcttcgcagttacttaattgcgagagggcgcaag
cgttttgaggtctatgtgtgtacgatggcagagagagattatgctttagaaatgtggaga
ttgcttgatccagattcaagattgattaattctgttcaacttcatgatcgaatggtgtgt
gtaaaatctggtttgaaaaagtccttgttgaatgttttccatgatggttcttgccatcct
ggaatggcattagtaattgatgatcgcctaaaagtttgggatgagaaagatcaatctaga
gttcatgtggttccagcattcactccatattatgctcctcaagcagaggcaaattgttcc
ataccagttctgtgtgttgccagaaatgttgcatgcaatgttaggggtagtttcttcaaa
gacttcgatgaaggcctcttgccaaggattagtaatatttcctatgaggatgagaatgat
atctcatctgctccggatgttggcaactatttgatagcagaggatgagaatgttgcagca
gtgaacggaaatagagatgcattgccttttgatggtatggcagatgctgaggtcgagcgg
aggatgaaggaagcatcaggcaattctcaagcattccatccaacagtggcgagctttgtc
atgccaatggcccctgcccagaatttagtttcgtcttcagtcgcaccagttgccccaccc
cttggcatgacgccacctccattcaaccaaccagttgttcaaccaggtttttcagatcca
ctgcaaggttctccagctagagaagagggtgaagttcctgagtctgagctagatccggac
acaaggagaaggcttctcatattacagcatggtcaagatacaagagatcctacgcctcca
ctcccagcaataccaccagtgcaagtcccagttccaccagtgcaacctcatgggaattgg
tttcccacagaggatggtattaatccaagtaatctgaatagaggttcagcaggtttcaca
gtacaatctgactctatgttctatgagaaaaagcagccacctcatccttcattctttcat
ggtggggatagtcctatgtcctctgatagatttagctatcagaaccagaggttttccagt
cagctaccgcatactgaggatcacaacatgcttcaaaaccatggacctccaaaatacata
gccttttcgggtgaggagctatcagctcggcatgttccctcaaggagaaacaaccagcta
gaatcaggaagacactttgcacaatatgcagggacctctgctggcatactagagggaatt
acgctgaagtgtggatccaaggtcgagtacaggtcaacattatgtgatactccagagcta
cagttctctattgaggtttggattgttggggaaaagataggtgaaggaattggtaggaca
aggagagaagcacagggtcaagctgcagagatgtcattaagaaacttggctcataaatac
ctgtcatctgatccaaataagatgactgatctgaaagaaaatggtttcggtagcaaccgc
aactattttggatactctggaaatacgagggatgatatgttgccagtttcaagcacttct
gaggaatctcgctttatgaaaatggaggataataactcccaaaaaacaggaggttctgtt
gctgctctcaaggaactttgcacgattgagggatataacttaaattttcaagctcgtccg
tctcctccagatggctcacttgggaaagaatcttatgctcaggtagaagttggcggacaa
attctaggcaaaggagttgcgctaacatgggaagaggccaaaatccaggctgctgatgag
gctattgtaactttaagatccatgctaggtcaacttggtcataaacggtctggttctcca
aggtcattggcacccaattttaataagcgcttcaagccagattttccaagggtgcagagg
gttccttatggaacatactccaggatcgaaggccatgttccttga
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