Panicum virgatum (switchgrass): 120656604
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Entry
120656604 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120656604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120656604
03036 Chromosome and associated proteins [BR:
pvir03036
]
120656604
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120656604
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120656604
mRNA degradation factors
5'-3' decay
Decapping complex
120656604
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120656604
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Mdt30
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
120656604
NCBI-ProteinID:
XP_039790693
LinkDB
All DBs
Position
1N:52903541..52910758
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AA seq
518 aa
AA seq
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MDPRARYPPGMGNGRGGNPNYYGRGPPPQQPHQHNHQHQQTSGAHHHQQYAQRQQQQQHH
HNHYQQQQHQHNHHQQQQQQQWLRRNQFARESAGAAGTSAPKALVPSTAADGVDSSSQDW
KAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALT
GSDILARAKNGTGKTAAFCIPALEKIDQDNNAIQVVILVPTRELALQTSQVCKELGKHLK
IQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCILKDCSMLIMDEADKLLS
PEFQPSVEQLIRYLPASRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFY
AFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHR
NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGL
AVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQTIYCQ
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgcgccaggtaccctccgggcatgggcaacggccgcggcgggaaccccaac
tactacggccgcggaccgccgccgcaacagccgcaccagcacaaccaccagcaccagcag
acctcgggggcgcatcaccaccagcagtacgcgcagaggcagcagcagcagcagcaccac
cacaaccactaccagcaacagcagcaccaacacaatcaccaccagcaacagcagcagcag
cagtggctgcggcggaaccagttcgcccgcgagtccgcgggcgcggccggtactagcgcg
ccgaaggccctggtgccatccacggccgccgatggcgtggattcgagttcacaagattgg
aaggctcaattgaagctgccgcctcaagatacacgctacaggacagaggatgttacagcc
actaagggaaatgagtttgaagactactttctcaagcgtgaactcttgatggggatatac
gagaagggatttgaaagaccctctcctatccaagaagaaagcattcctattgctttaact
ggtagtgacattcttgcaagagcgaagaatggaactggcaagactgctgcattttgtatt
cctgctctggaaaagattgatcaagataataatgctattcaagttgttatattggttccc
acaagggaattggctctacagacatcacaagtttgcaaggagctcggtaaacatttgaag
attcaagttatggttaccactggtggaaccagcttgaaggatgatattgttcgtctgtac
caacctgtacatttacttgttggaacacctgggcgtattttggatcttacaaagaaaggt
gtttgcattttgaaggactgttcgatgcttattatggatgaggcagacaagcttctctct
cctgagtttcaaccttcagtggaacagttgattcgctacctccctgctagtagacagatt
ttgatgttctcagcaacattccctgtgactgttaaggagttcaaggacaaatatctgcct
aaaccttatgtgattaaccttatggatgaacttacactgaagggaattacacagttctat
gcgtttgttgaagaaagacagaaagttcactgtcttaacaccctcttttccaagcttcaa
atcaaccagtcaataatattctgtaactctgtaaatcgtgttgaactattggcgaagaag
atcacagaacttggttattcttgcttctatattcatgcgaagatgctgcaagaccatcgt
aatagagttttccatgatttccgtaacggggcgtgcaggaaccttgtttgtactgatctt
tttacaaggggaatagatattcaagctgtcaatgtcgttatcaattttgatttcccgaag
aactctgaaacatatctccacagggttggtagatctgggaggttcggacaccttggtctg
gctgtgaatttgatcacctatgaggatcggtttaacttgtataggattgaacaagagctt
gggactgaaataaaaccaattcctcctcagatagaccagactatatattgccaataa
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