Panicum virgatum (switchgrass): 120656609
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Entry
120656609 CDS
T07260
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120656609
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Meiosis-specific proteins
Others
120656609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LON_substr_bdg
Motif
Other DBs
NCBI-GeneID:
120656609
NCBI-ProteinID:
XP_039790697
LinkDB
All DBs
Position
1N:complement(52969445..52977751)
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AA seq
1727 aa
AA seq
DB search
MRTRFLSDDFVAPSPSAAAAASSDRALALASLPFPYIPVSTPPEPHLPDPLPFPADFLPV
ASVSGDDLDSLPVASALSEFLASVVPHPLPVPDISAADEGLDDYLHGRGVYGKGYSSTDP
AAFKIPKGLDEMSRDKGEKEEGSSLEPFALKKERELLKELRFEVVEVDVLPVLQRKIASF
DDEDPDGGVMFSFGVPDVKIHLDFIDIDTETTITYPAEVAESIYQVEKIPVKHDDDEDCP
YARDGYCLEIAGLEHGLIVPQLEISRNSWELDECPAKPVISNIFLNIAENLNDGAQVHLP
SFDSTEFLRSRDMDMLAFVCEDAPHVEYQADKPITAKDVAEMDLVRINDNILLEKKSAFY
PLKPDGTCSDLPCFMLFEEPEITDFPSDDAFKMLVQSEKAEMNTSDEIFKDDFDQARRFY
ESVVSSELALVDDTFKSLPTPILNDDKAVRSMFPPIEEVLCSLKPLPLSAADGIYLDWHL
LSEGPCSRESCSTHASMVEEVKPCSLSSELQISCQQTPAFGIDFLEDFKKSAMLQHEDKQ
NEIYVPEPISHDPSAKLEAAQKYKQESDVTGHSHMERPSEKESSLLESMSQSNELNYYLN
VKNGTNKVRNNENAFTSDIPPSKQQAIPFSTRPKVDKLIEIHPVRLSDLIRGLIKDIHVN
YSSALQVSTYFRHSFSDGQGLNISKQKLLELITGESSEGLYNHCKNEDKMELIVLYALKQ
VAYYLCFFGLHAAYLYIGNLTAIFESIPEGLRNIQCCIGEARLKAEKQLFESHPSLSDIE
TILKSNTQIGQKILIVSDRTFWLPLGRKLTAMKMTSVEVGTYPSATYSDPVVKTNSKTWM
LEELWKSDCILLDNKNIPASFPFSEFSMILEYGGPNKSSTLLSLSPKLDDLPPLHFLYVT
LNDEDFPVALVEDNHTDKDLKSTLDAVVHTLQKDLQEKMNKMRIVDSLNFVPTTNQQEHL
QEKLSNHLAADPSKKIPVDGQLQNQGILDEKNIVDSHNFLPAAEQLNTLNQITFVNSQKI
VPAVEKSSSTSSVSANVLKKPQDNQSASASDFPLSVKTDSTKLGTLSAPEVVIVVNTVNH
GKHMLFSRRSSYQQILALEKEGMQVVERDVDLPVDLILGAAVCVLWYDTRTFGSSELTIS
ADTSTITNFIQDICANILMPISFCFSGCIMVFEVENRFLSSVMEASDSLYASAASLDMNL
QLFFSQTPKSTDQIILNCTRNVVRKNQAPPDIPESESLAESFLTAFPSIMPLSAHMILSS
GSLVDFLGWSHEQRTQAVEKYCLPPQNIHLFSALCKFGELGESRSVMTECSSVDSDISSA
LLQSTRKKKKRVVDFSVAINDPACPNPRDQLCGDYEHDKVLPPPMLRKFSHIEDTMPELP
EVFIVDQNLNMGRKGVSYKPRKHGVDTVARNQMIDDDFITELSPNFRPYNERTSSMVDTC
NFSGHAESGAKQPIRSSFPTSRSSFCRASSHPTFPSALEINSDPCDWDVWCGTNQTWTGH
LDGDIATSSRRNDLASRYQESRQETMQSPASSLSFLKQDFGYYGASQGSGWEMDYLRQMN
ENRIARQERSRCNASSAMSNSRMRESSYRILSAPPIESFSYQRNTDTPLRDQNPSNTESF
RHRRNINTPVRNQSPTNGAQRHGKGRGVTKAQSHSIRMDFKAQPSINHEKTIVPSIEPTW
TPLDKRARQKLSFATYGKEKQSKLVWRHQSSPGVGCGFRKRYREEGM
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgcggacccgcttcctctccgacgacttcgtcgcgccgtcgccgtcggcggccgcggcc
gcctcctccgaccgagccctagccctagcgtccttacccttcccttacatccccgtctcg
actcctcccgagcctcacctccccgacccgctcccattccccgccgatttcctccccgtc
gcgagcgtcagtggggatgatctcgactctctccccgtcgcttccgcgctctccgagttc
cttgcctccgtcgtcccgcatcccctacctgtaccggatatctccgccgccgacgagggc
ttggatgattatctccacggtaggggtgtgtatggcaagggttatagctcgacggatcct
gctgctttcaaaatccccaagggattggacgaaatgagccgcgacaagggtgagaaggaa
gaaggatccagtttggagcccttcgcacttaagaaggaacgggagctgttgaaggagctc
aggtttgaggttgtagaggtcgatgtcctaccggttttgcagagaaaaattgcatcgttt
gatgatgaagacccagatggtggtgtcatgttttcatttggtgtcccagatgtgaaaatc
catctggatttcattgatattgacactgagacaacaataacatatccagctgaagttgca
gagtcaatttatcaagtagaaaaaatccctgtaaaacacgatgatgatgaggactgtcct
tatgcaagagatggatactgcttggaaatcgcgggtctagagcatggcttaatagtacct
caattggagatcagtaggaattcttgggagcttgatgagtgcccagcaaagccagtgata
tccaatatttttcttaatattgctgaaaacttaaatgatggagcacaagttcatcttcca
tcatttgactcaactgagttcttgagatcacgtgatatggacatgttggcctttgtttgc
gaagatgccccacatgtggagtatcaagcagataaaccaattacagcaaaggatgtagca
gaaatggatcttgtgaggatcaatgataatatattactcgagaaaaagtcagcattctac
cctctcaaacctgatggcacctgttcagatttgccttgcttcatgctcttcgaggaacca
gagataaccgactttccttctgatgatgccttcaagatgcttgttcagtcagagaaggct
gagatgaatacgtctgatgaaatattcaaagatgactttgatcaagcaaggcgtttctat
gaatcggtggttagctctgagttggctttagttgatgatacattcaaatcactacctact
cctattttaaatgatgataaagcagtgagatctatgttcccccctatagaagaagtacta
tgctccctgaaaccacttcctctatctgcagcagatggaatttatttggattggcatctt
ctatcggaagggccatgcagccgggagagctgctctactcatgcgagcatggttgaggag
gtaaaaccttgcagtttaagttctgagctgcaaattagttgtcagcagacaccagctttt
ggcattgattttctggaggattttaagaaaagtgcaatgcttcaacatgaggacaagcag
aatgagatatatgttcctgaacctatatctcatgatccttcagctaagttggaagcagct
cagaagtataaacaagaaagtgatgttacaggtcatagccatatggagagaccttcagaa
aaggaatcgtccttgcttgagtcaatgtcacaatccaatgaactaaactactacttgaat
gtcaagaatggaaccaataaagtaaggaataatgagaatgcttttacttcagacatcccc
ccttcaaaacaacaagcaattcccttttcaaccagaccaaaagttgacaaactcatagaa
attcatcctgtcaggctctcagatcttatccgaggccttatcaaagacatccatgtaaat
tattcatctgctttgcaagtaagtacatatttcagacattctttctcagatgggcaaggt
ttaaacatttcaaagcaaaaacttcttgaactgataactggagaaagttcagaaggtttg
tacaatcactgtaaaaatgaagataaaatggagcttattgtactgtatgcattgaagcag
gttgcatattacctttgcttctttggtctgcatgctgcctatctgtatataggcaatttg
actgcaatctttgaaagtattcctgaggggttaagaaatattcaatgctgcattggtgaa
gcacgtttgaaagctgagaagcaattgtttgagtctcatccatcattgtctgacattgag
acaatccttaaatctaatactcagatcggccaaaagattcttatagtttctgatagaaca
ttctggttgccattgggtcgaaagctaactgctatgaagatgacatctgttgaggttgga
acatacccttctgcaacttactcagatccagtggtcaagacaaactctaaaacttggatg
ctagaagaattatggaaatcagactgcattctgctagataacaagaacattccagcttca
ttccctttcagtgagtttagcatgatactggaatatggaggtccaaataaatcatctacc
ttgttatcactgtctcccaaattagatgatttgccaccactgcatttcctgtatgtcaca
ctcaatgatgaagactttccagttgctcttgtcgaagacaatcacacagacaaggatctg
aaatccacattggatgctgttgtgcatacacttcagaaagacttgcaggaaaagatgaac
aaaatgcgtatcgttgattcattaaactttgtaccaacaacaaaccaacaggaacatctg
caggaaaagctgagcaatcacctcgctgctgatccatcaaaaaaaatccctgtggatggt
caactacagaatcagggaattttggatgaaaagaatattgttgattcacataactttctg
cctgcagctgaacagctcaataccttgaaccaaataacctttgtcaattcacaaaaaatt
gtgcctgcagttgagaagagtagctccacttcttctgtatctgccaatgtgctaaaaaaa
ccccaagacaaccaatcagcgtcagctagtgacttccctctcagtgtgaaaactgacagc
accaagttaggaacattgtctgccccagaggtagtgattgttgtaaatactgtaaatcat
ggaaagcatatgctgttctctcgaagatcatcttatcagcagatactagctttggagaaa
gaaggaatgcaggttgtagagcgagatgttgatctgcctgtggacctaatacttggcgct
gcagtttgtgtactatggtatgataccagaacctttgggtccagcgaattaacaatatca
gcggacacatccactataacaaattttatacaagacatttgtgccaacattctgatgccg
attagcttctgtttcagtggctgcataatggtcttcgaggttgaaaaccgcttcctttct
tctgtaatggaggcatctgattctctatatgcttcagctgctagcttggacatgaatttg
cagctatttttctcacaaacgcccaaatcaacagatcaaatcattctcaattgcaccagg
aatgttgttaggaaaaatcaagctcctccagatatacctgaatcagaaagtttggccgaa
tcatttctcacagcattcccttcaattatgcctctgtctgcacatatgatactttcttct
ggtagtcttgtggatttcctcggatggtcacatgagcaacgcactcaggctgttgaaaag
tattgtttgccaccacagaacatccatctcttcagtgctttgtgcaaatttggtgagtta
ggtgaatcaaggtccgtaatgactgaatgctcttctgtagattcagatatcagtagtgca
ttattacagtccacaagaaaaaagaaaaagcgtgttgtggacttttcagtagcaatcaac
gatcctgcctgccctaatcctcgtgatcaattgtgtggtgattatgaacatgacaaggtg
ttgccaccacctatgttaaggaaattctctcacatagaggatacaatgcctgagctccca
gaagtctttattgttgatcaaaatttgaatatggggaggaaaggtgtctcttataagcca
agaaaacatggcgtggacacagttgctaggaatcagatgatagatgatgacttcatcacc
gagttgtctccaaatttcagaccatacaatgaaaggactagcagtatggtggacacatgc
aatttctctgggcatgccgaatcgggagctaagcagccaatcagaagttcctttcccacc
agcagatcatcattctgcagagcttccagccatccaacatttccatcagcactagagatc
aatagcgacccttgtgactgggatgtttggtgcggtacaaatcaaacatggacaggtcat
ttggatggggatatcgccacaagctctcgcagaaatgatctagccagcaggtatcaggaa
tcaagacaggaaacaatgcagagtccagcaagttctctttcttttctgaaacaggatttc
ggttattatggagcttcacaaggctcaggttgggaaatggattatctaaggcaaatgaat
gaaaatagaatagcacgccaagagcgatctagatgcaatgcttcatcagcaatgtcaaat
tcaagaatgagagagagctcatatagaattctgagtgctcctcctattgaatctttcagt
tatcaaagaaatacagacactcctttgagggaccagaacccttcaaatactgaatctttc
agacatcgaagaaatataaacactcctgtgaggaatcagagccctacaaatggggctcaa
aggcatgggaaaggcagaggagtaactaaagcacagagccatagcataagaatggatttc
aaggcacagccaagtataaatcatgaaaagaccatagtgccgtccatcgagcctacatgg
actcctcttgacaagcgagcgagacagaaactttcatttgcaacgtacggaaaggagaaa
caaagcaagctggtctggagacatcaaagcagccctggtgttggttgtggtttccggaaa
agataccgggaagaaggtatgtaa
DBGET
integrated database retrieval system
