Panicum virgatum (switchgrass): 120656620
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Entry
120656620 CDS
T07260
Name
(RefSeq) autophagy-related protein 13a-like
KO
K08331
autophagy-related protein 13
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120656620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120656620
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120656620
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
ULK complex
120656620
Atg1 complex
120656620
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120656620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
120656620
NCBI-ProteinID:
XP_039790714
LinkDB
All DBs
Position
1N:complement(53141590..53146608)
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AA seq
547 aa
AA seq
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MASLSDSAGAAGGGGRAGAELMVPQFLHKALHAILAVRSPRPHASAPAPPASSSSAAAFR
RRDQWFHLPLHAPPPPPAAENLPEPTPGEPLVVDVYLAPSGGGAGAEEVVERWTVACEPW
PSAAAAAAVGEGLAVNRAYKRCITLLRSLYAALRFLPAYRAFRTLCASSGQVYNYEMGHR
VGSFAAPFSRAEEAAMRTNRFAPVETQLGRLVVSVQYRPSLAAFNFDVTSLAPAAIIMDY
VGSPAAEPMRAFPASLTEPAGSAFPQPSRRPNSWASPVPWPHMPGQQAKFSPPPTHYASP
TPSPPTFGYLHSRFSGETAPMSIPQVGGSRGPVHHRNMSEPTRAFMFPPPSPKSVRGEAG
MHESPTEANRSFKRVDGIRMGNLYANLPSGSKIKDSRDESGSGRFSGVFSSSGSPRLGFS
RSSSRLSMQDDTDDADFPFAVDDVDPDSRPGSSGGKDAGDQAGSSSHKSQDAAVGYLVHL
LKSARPLRDSSYSTHTSRAESIEAASTSSVMSRRTSDALEELESFREIKENLLARSRSKL
QDSLDKP
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcctgtcggattcggcgggcgcagccggcggcgggggccgcgcgggcgcggag
ctgatggtgccgcagttcctgcacaaggcgctgcacgccatcctcgcggtgcggtcgccg
cgcccgcacgcctcggcgcccgcgcccccggcgtcgtcttcgtcggcggcggcgttccgg
aggcgggaccagtggttccacctgccgctccacgcgccgccgccgccgcccgcggcggag
aacctgccggagccgacccccggggagccgctcgtcgtggacgtgtacctggccccgtcg
ggcggcggcgccggcgcggaggaggtggtggagcggtggaccgtggcgtgcgagccctgg
ccctcggccgcagcggcggcggccgtgggggaggggctggcggtcaaccgggcctacaag
cgctgcatcacgctgctgcggtcgctctacgccgcgctccgcttcctcccggcgtaccgt
gccttccgcacgctctgcgcgtcctccggccaggtctacaactacgagatgggccaccgc
gtcggctccttcgccgcgcctttctcccgcgccgaggaggcggccatgcgcaccaatcgc
ttcgcccccgtcgagacccagctcggccgcctcgtcgtctccgtccagtaccgccccagc
ctcgccgccttcaatttcgatgtcacctccctcgcgcccgccgcgatcatcatggattac
gttggcagcccggcagccgagcctatgcgcgccttcccggcctcgctcacggagcccgcc
ggctcggccttcccgcagccatcgcggcgccccaacagctgggcgtcgcctgtgccctgg
ccgcacatgccggggcagcaggcaaaattctcgccgccgccgacacattacgcgtcccct
acgccttcgccgcccacgtttggatacctgcactcgcggtttagcggcgagactgcgcca
atgagcattccgcaggtgggcggtagcaggggccctgtgcaccatcggaacatgtcggaa
cccactcgagccttcatgtttcctccaccttcgcccaagagtgtgcggggggaggcaggg
atgcatgagtcccccaccgaggccaatcggtcgttcaagagggtggatggcatccggatg
ggcaatctctatgctaacttgccgtctggttcaaagattaaagacagtagggatgaatct
ggcagtggcaggttctctggtgtcttctcttctagtggttcaccacgacttgggttctcg
agaagttcaagcagattgtctatgcaggatgatactgatgacgcagattttccttttgct
gtggatgatgttgatccagattcccggccagggagtagtggtgggaaggacgctggtgat
caggcaggttcctcatcccataaatcacaagacgctgcggtcggttatcttgtccacctg
ctaaagtctgcacgtccactgcgagattctagctactcaactcatacatcaagggctgaa
tctattgaagcagcaagcacaagctccgtcatgtcccgcaggacatctgatgcactcgag
gaacttgaatcattcagagaaataaaggagaacctgctagcacgtagtagatctaagctg
caggattcattggataaaccctag
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