Panicum virgatum (switchgrass): 120656753
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Entry
120656753 CDS
T07260
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120656753
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120656753
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120656753
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
120656753
2.5.1.29 geranylgeranyl diphosphate synthase
120656753
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120656753
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
NIT
Motif
Other DBs
NCBI-GeneID:
120656753
NCBI-ProteinID:
XP_039790867
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All DBs
Position
1N:complement(54864757..54866210)
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AA seq
341 aa
AA seq
DB search
MALSIFLPLPLPKLLSSSRSHRLLPVRASSDAPAASASFDLRRYWTTLIADVESELDAAM
PMRPPESIHAAMRYAVLPGAGKEGPAKRAPPVLCVAACELLGAPRSAALPAAAALEMLHA
ASLVHDDLPCFDAAPTRRGRPSTHAAFGTDMAVLAGDALFPLAYTHIIAHTPSPDPVPHA
VLLRVMAELARAVGSTGMAAGQFLDLAGATALGEAEVMQVLTKKFGEMAECSAACGAMLG
GAGPDEEAALRRYGRTIGVLYELVDDLRSASGNGKMRSNASVLRALGMDRALGIVEELKA
QAKTEADRFADKYGDRVLPLYSFVDYAVERGFELQDAAAAP
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggctctctccatcttcctccccctccccctgcccaagctactctcctcctccagatcc
caccgcttgctccccgtccgggcgtcctccgacgcgcccgccgcctccgcttccttcgat
ctgcgccgctactggaccaccctgatcgccgacgtcgagtccgagctcgacgccgcgatg
cccatgcgccccccggagagcatccacgccgccatgcgctacgcggtcctcccgggcgcc
ggcaaggaggggcccgccaagcgggcgccccccgtgctgtgcgtggccgcctgcgagctc
ctcggcgcgccgcgctcggccgcgctcccggccgcggcggccctcgagatgctccacgcg
gcgtcgctcgtgcacgacgacctgccctgcttcgacgccgcgcccacgcgacgcgggcgc
ccctccacgcacgccgccttcggcaccgacatggccgtcctcgcgggcgacgcgctcttc
ccgctcgcctacacccacatcatcgcgcacaccccgtcgccggacccggtgccccacgcc
gtcctcctccgcgtcatggcggagcttgcgcgcgccgtcggatccaccggcatggcggcg
ggccagttcctcgatctggccggcgccaccgcactcggcgaggccgaggtcatgcaggtc
ctgacgaagaagttcggcgagatggccgagtgctccgcggcctgcggcgccatgctcggc
ggggccgggcccgacgaggaggccgcgctgcggcgctacggccgcaccatcggcgtcctg
tacgagctcgtcgacgacctccggagcgcttcagggaacggcaagatgaggagcaacgcc
agcgtcctgcgcgcgctgggcatggaccgcgcgctcggcatcgtggaggagctcaaggcg
caggccaagacggaggccgacaggttcgcggacaagtacggcgaccgggtgctgcccctg
tacagcttcgtggactacgcggtggagagagggtttgagctccaggatgcagcggcagcg
ccataa
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