Panicum virgatum (switchgrass): 120656774
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Entry
120656774 CDS
T07260
Name
(RefSeq) protein indeterminate-domain 6, chloroplastic-like
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120656774
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120656774
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Paralog
Gene cluster
GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-met
zf-C2H2_jaz
zf-C2H2_6
zf-C2H2_4
zf-C2H2_STOP2_C
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
120656774
NCBI-ProteinID:
XP_039790890
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Position
1N:55164246..55171872
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AA seq
584 aa
AA seq
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MASNSSAAAVAALFGIRDGDHHQEQIKPLLAQPHQQLPPAPLLNAAASSSAPGSAQAAAA
ASPPVKKKRTLPDPDAEVIALSPKTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKL
KQKDPLQAQRRRVYLCPEPTCAHHDPARALGDLTGVKKHFCRKHGEKKWKCDKCAKRYAV
QSDWKAHSKVCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARLPPPGLTASHLYGA
TSAANMALSLSQVGSHLASTLGGDAHAHHQDLLRLGGAGAANRFDHLLGPSSASAFRPLP
PPPSSAFLMGAPQEFVDGDGTGSHAFLPGKAFQGLMHLPDLQGNGAGGPLASSAPGLFNL
GYIANSANSSGTSSHGHASQGHLTSDQFSEGGGGGGGGGGSETSAAMLFSGGGGFAGGDH
QVAPGGMYNDQAVMLQQMSATALLQKTSQMGSNNSSAHGGASVFGGLVGSSVPSAAHGRA
PMLDQSQMHLQSLMNSLAGGGMFGGANSGSMIDPRMYDMDQDVKFSQGHAGAEMTRDFLG
VGGGGVMRGMPVAKGEHHDGAGDISSLEAEMKSASSSFTGRRMQ
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaattcatcggcggcggctgtggcagcgctgtttggaattagggatggcgac
caccatcaggagcagattaagccgctgcttgcgcagccgcaccagcagctgcctcctgcg
ccactgctcaacgcggccgcctcgtcgtcggctcctgggtccgcccaggcggcggcggcg
gcgtcaccgccagtgaagaagaagagaaccctaccagaccctgacgcggaggtgatcgcg
ctgtcgcccaagacgctgctggcgacgaaccggttcgtgtgcgaggtgtgcaacaagggg
ttccagcgggagcagaacctgcagctgcaccggcgcgggcacaacctgccgtggaagctg
aagcagaaggacccgctgcaggcgcagcggcggcgcgtgtacctgtgcccggagccgacg
tgcgcgcaccacgacccggcccgcgccctcggcgacctcaccggggtcaagaagcacttc
tgccggaagcacggcgagaagaagtggaagtgcgacaagtgcgccaagcgctacgccgtg
cagtccgactggaaggcgcactccaaggtctgcggcacgcgcgagtaccgctgcgactgc
ggcaccctcttctccaggagggacagcttcatcacccacagggctttctgcgacgccctc
gcgcaggagaccgcccgcctcccgccgcccggcctcaccgccagccacctctacggcgcc
accagcgcggccaacatggcgctcagcctctcgcaggtcggctcccacctcgcatctacc
ctcggcggggacgcgcacgcccaccatcaggacctgctccgcctcggcggcgcaggcgcc
gccaaccgcttcgatcatctgctaggcccgtccagcgcctccgcgttccgacccctgccg
cctccaccatcgtcggcgttcctcatgggcgcgccgcaggagttcgtcgacggcgacggc
actgggtcccacgcgttcttgcccggcaaggcgttccaaggcctcatgcatctgccggat
ctccaaggcaacggcgccggtggtccgctggcttcgtcggctccgggtctcttcaacctg
ggctacatcgcaaacagcgcaaacagctcaggtacttccagtcatggccatgcaagccag
gggcacctgacaagtgaccagttcagtgaaggaggaggtggcggcggtggcggcggcggc
tctgagacttcagctgcgatgcttttcagcggcggagggggctttgccggcggtgaccac
caagttgctcctggcgggatgtacaacgaccaggccgtgatgttgcaacagatgtccgcg
acggcgctgctgcagaagacgtcgcagatgggctctaataactcgagcgcgcacggcggc
gcgtccgtgtttgggggcctcgtgggctcgtcggtgccctctgctgcgcatggccgggcg
cccatgctcgaccagagccagatgcacctgcagagcctgatgaactcgctggccggcggc
ggcatgtttggcggcgccaacagtggcagcatgattgacccaaggatgtatgacatggat
caagatgtgaagtttagccagggccatgctggcgctgagatgacgcgcgacttccttggc
gtcggtggcggcggtgtcatgagggggatgccggtggcgaagggggagcaccatgacggt
gccggtgacatcagctccttggaggccgagatgaagtcggcctcgtcgtccttcactgga
agaaggatgcaataa
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