Panicum virgatum (switchgrass): 120656871
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Entry
120656871 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 21-like isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120656871
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120656871
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120656871
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120656871
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120656871
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
120656871
NCBI-ProteinID:
XP_039791004
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Position
1N:56779548..56785247
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AA seq
745 aa
AA seq
DB search
MAEQDGAAGQSPLDSAPGISAENGDGNTEQRQPFFSMCQSIRSVSYSNSWESICAPAANE
NDPNSGLNSMVDDHVLITSSSLGSEHPEPEGISGTVDGDGKSRSPHQINKEACLVEDAME
MEVDEFDVPHGERSEQPEPFSTEQPHSIDGLDLWDDKDNQKLFPLNGDQCNSNIVEVGYA
EDKLFPSSFSFRRQSQSVGAGLSNMGNTCFLNATLQCITHTVPLFLKLRSTDHSTPCSCM
DNKDGFCSFCALKEHVDDSIRRSGSVIMPVKFRDNLRKLSSDFRPGQQEDAHEFLRCLLD
NLHKCTLDPMSKGKGSSFDEESIVKEIFGGQLKSQLSCCECEHISETFEPFLDLSLEIDQ
VDHLEDALESFTKVEQIGDSEDKLTCEGCNAQVCKNKQLTLHRAPDVIAFHLKRFTTLDN
SVEKIDKHVSYPLEVDLKRFHSNPDTAGELKYDLYGVVEHSGLPNYGHYVCSIRSSPSTW
YLMNDSHVDSITDETALKQEAYILFYVRQGKFPWFCSLLESKDALHAENTRGASPVSVLE
NIDANCSTSGGGSSSNSGDKLQKNEARQLEESEKDETSQYKASFCPEEPFKRSSHSASNI
NNTRDEISPSRPSPQVDAIRCPHSVETTNLDMPSTPLRSKLLFSHNEVGVFEFEDYDDEE
TPLLPDKKFLTKANKTKAASASKAVKGPCIDQNARRLMSTMPSSRRKGLMDCMLTQQNAN
QEPRSRRCPASDPLNKKKRKMVIQC
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcaggacggcgccgccgggcagagcccgctcgactctgctccggggattagt
gctgaaaatggggatgggaatactgagcagcgtcaaccattcttctccatgtgccagtca
attcgctctgttagctactcaaattcgtgggaaagcatttgtgctcctgctgccaatgaa
aatgaccccaatagtggcctgaactcaatggtggatgatcatgtcctgatcacatcttct
tctcttggaagcgagcaccctgaacctgagggcatatctggtactgtagatggggacgga
aagtcgcgttcaccacatcaaatcaataaggaagcctgtttggtagaagatgccatggaa
atggaagtggatgaatttgatgtgccacatggagaaagaagtgagcagccagaacctttt
agcacagagcagccccattcaattgatggattggatttatgggatgacaaagataatcag
aaactgtttcccctcaacggcgaccagtgcaactccaatattgttgaagttggttatgct
gaagataagctgtttccttcgtccttttctttcagaaggcaatcccaatctgtgggagca
ggtcttagcaatatgggaaacacatgcttcttaaatgcaactcttcagtgcatcactcac
actgtgccgctttttctcaagcttcgctcaactgatcattccactccatgttcatgtatg
gataataaagatggcttctgttctttctgtgcccttaaagaacatgtcgatgattcaatt
cgaaggtctggatctgttataatgccagtgaagttcagagataatttaagaaagttatct
tctgattttagaccaggacagcaagaggatgcacatgaattcctacgttgcttgcttgat
aacttgcataagtgtacccttgatcccatgtcgaagggcaagggctcatcctttgatgaa
gaaagtatagtcaaggagatttttggaggccaactgaaaagccagttgtcttgctgcgag
tgtgagcacatctcggagacatttgagcccttcttggatctaagcttggagatcgatcag
gttgatcacctggaagatgctttggaatcttttaccaaggtagagcagattggggactct
gaagacaagctcacctgtgaaggatgcaatgctcaagtttgtaagaacaagcagcttaca
cttcatagagcaccagatgttattgcatttcatctgaagcgttttaccacccttgacaac
tctgtcgaaaagatcgacaaacatgtgtcataccctctggaggttgatttgaagcggttc
cacagtaacccagacactgcaggggagttgaaatacgatctttatggcgttgttgagcat
tctgggttacccaactatggccattatgtgtgcagtattcgttcttcaccaagcacttgg
tacttgatgaatgactcccatgttgattctattactgatgaaactgcattaaagcaggaa
gcatatattctcttctatgttaggcagggcaaatttccatggttctgtagtttgctagag
agcaaggatgccctacatgctgagaatactcgcggtgcatctcctgtgtcagttttggaa
aatattgatgcaaactgttcaacttctggaggaggtagtagcagtaattctggtgacaag
ttacagaaaaatgaagccagacagttagaggagtcagagaaggatgaaaccagtcaatac
aaagcatcattctgtcctgaggagccatttaagagaagttcacatagtgcttccaacatc
aacaacacaagagatgaaatcagtccatcaagaccatctccccaagttgatgccattaga
tgtccccatagcgtagaaactaccaatctggatatgccctctactcctctgcgctccaag
ctattgttttctcataatgaggttggtgtgtttgagttcgaggactacgatgacgaagag
actcctttgcttccagataagaaatttctaactaaggcgaataaaactaaggctgcatcc
gcatctaaagctgtgaagggtccttgcattgatcagaatgcaaggcgtttgatgagtacc
atgccatcctcaagaagaaaaggcctcatggactgcatgctcacacagcaaaatgcaaat
caggagcctcgtagtcgcagatgccccgcaagtgaccctctgaacaaaaagaaaagaaag
atggttattcaatgctag
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