Panicum virgatum (switchgrass): 120656875
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Entry
120656875 CDS
T07260
Name
(RefSeq) ABC transporter B family member 2-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120656875
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120656875
04147 Exosome [BR:
pvir04147
]
120656875
04090 CD molecules [BR:
pvir04090
]
120656875
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120656875
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120656875
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120656875
CD molecules [BR:
pvir04090
]
Proteins
120656875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
Zeta_toxin
AAA_29
AAA_16
RsgA_GTPase
DUF87
NB-ARC
AAA_14
APS_kinase
HUTI_composite_bact
Motif
Other DBs
NCBI-GeneID:
120656875
NCBI-ProteinID:
XP_039791008
LinkDB
All DBs
Position
1N:complement(56806960..56821713)
Genome browser
AA seq
1258 aa
AA seq
DB search
MSSPANGAAQEGGGGGGGKKEAEEVARVPFLKLFSFADQWDCVLMAVGSLGACAHGASVP
VFFIFFGKLINIIGIAYLFPTTVSGRVAKYSLDFVYLGIVILFSSWTEVACWMHTGERQA
AKMRLAYLRAMLDQDIAVFDTEASTGEVINAITSDILVVQDAISEKVGNFMHYISRFVAG
FAIGFSQVWQISLVTLAIVPLIAIAGGTYAYVTIGLMARVRKSYVKAGEIAEEVISNVRT
VQAFVGEEKAVRSYREALLTTYKYGKRGGLAKGLGLGSMHSVLFLSWALLIWFTSIVVHK
RISNGGESFTTMLNVVIAGLSLGQAAPNISTFLRARTAAYPIFQMIERSTVNKSSSKTGR
TLPAVDGHIQFRNVHFSYPSRPDVVILNRFSLDFPAGKIVALVGGSGSGKSTVVSLIERF
YEPLSGSILLDGHDIRELDVKWLRRQVGLVNQEPALFATSIRENILYGKEDATMDEIDHA
AKLSEAITFINHLPDRYETQVGERGIQLSGGQKQRIAISRAILKNPSILLLDEATSALDA
ESEKSVQEALDRVMVGRTTVVIAHRLSTIRNADTIAVVDGGRIVETGTHEQLMANPRGAY
SSLIQLQEAAQLQQKPSFSDSASITRPVSLKYSRELSGRTSMGASFRSDKDSISRYGAAE
AHEEARKGKPVSMRKLYSMVRPDWFFGVSGTLSAFAAGSQMPLFALGVTQALVSYYMGWE
TTKQEVRKISVLFCCGAVLTLVFHVVEHLSFGIMGERLTLRVRERMFSAILRNEIGWFDD
TSNTSAMLSSRLEADATLVRTIVVDRSTILLQNVGMIVTSLIIAFILNWRITLVVLATYP
LMVSGHISEKMFMKGYGGNLGKSYLKANMLAAEAVSNIRTVAAFCSEEKVIKLYADELKE
PSKRSFRRGQGAGLFYGVSQFFLFSSYALALWYGSHLMSKELATFKSVMKSFMVLIVTAL
AMGETLAMAPDIIKGNQMVSSVFDILDRKTDVQIDAGEDIKRVEGLIELRGVEFRYPSRS
DVTVFKGLDLLMKAGRSMALVGMSGSGKSTVLSLILRFYDPVAGRILIDGKDIRKLKLKS
LRKHIGLVQQEPALFATTIYENILYGKDGATEAEVIEAATLANAHSFISSLPEGYQTKVG
ERGVQLSGGQKQRIAIARAIVKDPAILLLDEATSALDVESERVVQQALDRVMKNRTTVMV
AHRLSTIKNADVISVLQDGKIIEQGAHQQLIENRNGAYHKLVSLQQQQQEAVQRQQSS
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgccggcgaatggcgccgcccaggagggcggcggcggcggcggcgggaagaag
gaggcggaggaggtggccagggtgccgttcctgaagttgttctcgttcgcggaccagtgg
gactgcgtgctgatggcggtggggtcgctgggcgcctgcgcgcacggcgcctccgtgccc
gtcttcttcatcttcttcggcaagctcatcaacatcatcggcatcgcctacctcttcccc
accaccgtctccggccgcgtcgccaagtactcgctggacttcgtctacctcggcatcgtc
atactcttctcgtcgtggaccgaggtggcgtgctggatgcacaccggcgagcggcaggcg
gcgaagatgcggctggcctacctgcgcgcgatgctggaccaggacatcgccgtcttcgac
accgaggcgtccaccggcgaggtcatcaacgccatcaccagcgacatcctcgtcgtccag
gacgccatctccgagaaggtgggcaacttcatgcactacatcagccggttcgtggccggc
ttcgccatcggcttctcgcaggtgtggcagatcagcctcgtcacgctcgccatcgtcccg
ctcatcgccatcgccggcggcacctacgcctacgtcaccatcggcctcatggcccgcgtc
cgcaagtcctacgtcaaggccggcgagatcgccgaggaggtgatcagcaacgtgcggacg
gtgcaggcgttcgtcggcgaggagaaggcggtgaggtcctaccgggaggcgctgctgacg
acgtacaagtacggcaagaggggcggcctcgccaagggcctcggcctcggctccatgcac
tcggtgctcttcctctcctgggcgctgctcatctggttcaccagcatcgtcgtccacaag
cggatctccaatggcggcgagtccttcaccaccatgctcaacgtcgtcatcgccggcctg
tcgctcggccaggcggcgccgaacatatcgacgttcctgcgggcgaggacggcggcgtac
cccatcttccagatgatcgagaggagcaccgtgaacaagtcgagctccaagaccggccgc
acgctgccggcggtcgacgggcacatccagttccgcaacgtgcacttcagctacccgtcc
cggccggacgtcgtcatcctcaacaggttcagcctggacttcccggccggcaagatcgtc
gccctcgtcggcgggagcgggtccggcaagagcaccgtggtctcgctcatcgagcgcttc
tacgagccactgtccggctcgatcctgctcgacgggcacgacatcagggagctcgacgtc
aagtggctgcgacggcaggtcgggctggtgaaccaggagccggccctgttcgcgacgagc
atccgggagaacatactatacggcaaggaggacgccaccatggacgagatcgaccacgcg
gcgaagctgtcggaggccataacgttcatcaaccacctccccgaccggtacgagacgcag
gtcggcgagcgcgggatccagctctccggcgggcagaagcagcgcatcgccatctcgaga
gcgattctgaagaacccgtcgatactgctcctcgacgaggcgaccagcgcgctggacgcc
gagtccgagaagagcgtccaggaggcgctggaccgcgtcatggtcggccgcaccaccgtg
gtgatcgcgcaccgcctgtccaccatccggaacgccgacacgatcgccgtcgtggacggt
ggccggatcgtcgagactggcacgcacgagcagctcatggcgaacccgcgcggcgcgtac
tcctcgctgatccagctgcaggaggctgcccagcttcagcagaagccgtctttctctgac
agcgcaagcatcaccaggcccgtaagtttgaagtattcaagggagttgtccgggaggacg
agcatgggtgccagcttccgttccgacaaggactccatcagccggtacggcgccgccgag
gcgcacgaggaagcgcgcaaggggaagcccgtgtccatgaggaagctctactccatggtg
cggccggattggttcttcggcgtgtcgggcaccctcagcgccttcgcggcgggctcccag
atgccgctcttcgcgctgggcgtcacgcaggcgctggtgtcctattacatggggtgggag
accaccaagcaggaggtccgcaagatctccgtgctcttctgctgcggcgccgtgctgacg
ctggtgttccacgtcgtcgagcacctcagcttcggcatcatgggcgagcggctcacgctg
cgggtccgggagaggatgttctcggcgatcctgcggaacgagatcgggtggttcgacgac
accagcaacaccagcgccatgctgtcgtcgcggctcgaggcggacgccacgctcgtgcgc
accatcgtcgtcgaccgctccaccatcctgctgcagaacgtcggcatgatcgtgacctcg
ctcatcatcgccttcatactcaactggaggatcacgctggtcgtgctcgcaacctacccc
ctcatggtcagcggtcacatcagtgagaaaatgttcatgaaaggttacggcggcaacctc
ggcaagtcgtatctgaaggccaacatgctcgccgcggaggcagtgagcaacatccggacg
gtggcagccttctgctcggaggagaaggtgataaagctctacgcggacgagctgaaggag
ccatcgaagaggtccttccggcgaggccagggcgccggtctgttctatggagtttctcag
ttcttcctcttctcttcatacgcactggcgttatggtatggttcgcatctgatgagcaag
gagctggccaccttcaagtccgtgatgaagtccttcatggtgctcatagtgacggcgctg
gccatgggggagacgctggcgatggcgccggacatcatcaaaggcaaccagatggtgtcc
tcggtgttcgatatcctggaccgcaagaccgacgtccagatcgacgcaggcgaggacatc
aagagggtggaggggctaatcgagctgcgcggcgtcgagttccggtacccgtcgaggtcc
gacgtgaccgtgttcaagggcctcgacctcctgatgaaggccggcaggagcatggcgctc
gtcggaatgagcggctccggcaagagcaccgtgctgtcgctcatcctccggttctacgac
ccagtcgccggaagaatcttgatcgacgggaaggacatcaggaagcttaagctgaagtcg
ctgaggaagcacatcggcctggtccagcaagagccggcgctgttcgcgacgacgatctac
gagaacatcctgtacggcaaggacggggcgacggaggccgaggtgatcgaggcggcgacg
ctggcgaacgcgcactcgttcatcagctcgctgccggaggggtaccagaccaaggtcggg
gagcgcggcgtgcagctgtccggcgggcagaagcagcgcatcgcgatcgcgcgcgccatc
gtcaaggacccggccatcctgctcctggacgaggcgacgagcgcgctggacgtggagtcg
gagcgcgtcgtgcagcaggcgctggaccgggtgatgaagaaccggaccaccgtgatggtg
gcgcaccggctgtcgacgatcaagaacgccgacgtcatctcggtgctgcaggacggcaag
atcatcgagcagggggcacaccagcagctgatcgagaacaggaacggcgcctaccacaag
ctcgtcagcttgcagcagcagcagcaggaggcggtgcagaggcagcagagctcatga
DBGET
integrated database retrieval system
