Panicum virgatum (switchgrass): 120656914
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Entry
120656914 CDS
T07260
Name
(RefSeq) DNA topoisomerase 2-like isoform X1
KO
K03164
DNA topoisomerase II [EC:
5.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120656914
03036 Chromosome and associated proteins [BR:
pvir03036
]
120656914
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
120656914
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Topoisomerases
120656914
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromosome condensation proteins
Other regulators of chromosome condensation
120656914
Centrosome formation proteins
Centriole proteins
120656914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
TOPRIM_C
DNA_gyraseB
HATPase_c
Toprim
HalOD1
Myco_19_kDa
Mei5
Motif
Other DBs
NCBI-GeneID:
120656914
NCBI-ProteinID:
XP_039791077
LinkDB
All DBs
Position
1N:complement(57182533..57190402)
Genome browser
AA seq
1482 aa
AA seq
DB search
MTGPLHSSSGHNAAAGGGGGKTIEEMYQKKSQLEHILLRPDTYIGSVEKHTQTLWVYEVG
AMVYRSVTYVPGLYKIFDEILVNAADNKQRDPRMDSLRVEIDVEGCCISVYNNGDGIPVE
VHQEEGVYVPEMIFGHLLTSSNYNDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQK
KYKQVFSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLEDDVVALMRKRVVDMA
GTLGNTVKVQLDGQKLSVKSFSDYVDLYMKSANSDRPDALKKAYEYVNERWEVCVTQSEG
QFQQVSFVNGIATIRGGTHVDYIANQIANYVMTIVNKKNKHANMKAHNVKSHLWVFVNAL
IDNPAFDSQTKETLTTRQGSFGSKCELSPKFFKDVEKIGVVSNVLSWADFKLSKELKKTD
GSKKSRISGLTKLEDANEAGGKDSDKCTLILTEGDSAKALAMSGIAEVGRDHYGVFPLRG
KLLNVREASHKQIMDNAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDHDGSHIKG
LLINFIHSFWPSLLKVPSFLVEFTTPIIKATKNNKTQAFYTIPEYEEWKRKLGASASSWT
IKYYKGLGTSTSKEAKEYFSDIGNHKKDFVWVDDQDGNEIELAFSKKRIADRKQWLTNFQ
PGTYLDHKEKKIKYRDFINKELILFSMVDLQRSIPSMVDGFKPGQRKILFCAFKRNLVKE
TKVAQFSGYVSEHSAYHHGEQSLASTIVGMAQSFVGSNNINLFFPGGQFGTRCQGGKDAA
NARYIFTKLSHITRSIFPKDDDILLNYLNDDGQSVEPSWYVPILPMVLVNGSEGIGTGWS
TYIPNYNPRDIVANLRRLLNDESTVPMHPWYRGFKGSIVKSHNAKVAGATYTITGIIEAV
DSTTLRITELPIRRWTQDYKDFIDSVTFDPKDKDKETFIEEFTMQGDSDDVYFVLKLTED
NMNKVMEEGLVKKFKLTTTIGTSNMHLFDSDGKIRKYDTPEQILEEFYKLRLEFYVNRKK
ALLQNIKLDLKKHENKIRFIRCVVDNEIVVNNRKRADLFLELREKNFDPFPKKKKKAEPA
AVGATEEEENEEESPEAANGVGPSDYEYLLSMAIGTLTLEKIQELNAEREKLMKDVEELE
NTAPKSLWLRDLDTLEKELDVLDQIDLADEEERRKKREKNTNKGLKAAPKKQRKNAAVQL
PKVESDTEGDGAEPVVAKRGAQRKKPAKKVNGAGSDDEDYVAENAKPEHQKKKQTKKASA
PVDEDDMPTLKDRMAAFSINDFSPDSSALETETTEDQNEDKGPNGPSRRGRVKKGLSSLA
VISDDEDDDVDFAMEVPEVQVEKKGRGRKTDAAATKPKAAATRKRAPAQGKAMMLKPTED
SNTSAPSPEKKVRKMRESPFNKKSGSILQRASTAAASSSETTAEASPPSGSSAEPAAAPQ
PRRTARATTSKPVYISESDPEDEVVELTDDSDFDVDGDSDDE
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgacgggccctctccactccagctccggccacaacgccgccgccggcgggggcggcggc
aagaccatcgaggagatgtaccagaagaagtcgcagctggagcacatcctgctgcgccca
gacacctacatcggctcggtggagaagcacacccagacgctctgggtctacgaggtcggc
gccatggtgtaccgctcggtcacctacgtcccgggcctctacaagatcttcgacgagatc
ctcgtcaacgccgccgacaacaagcagcgggacccccggatggactcgctccgcgtcgag
atcgacgtcgagggatgctgcatctctgtctacaacaacggcgacgggatccccgtcgag
gtccaccaggaggagggtgtctacgtgccggagatgattttcggccacctcctcaccagc
agcaactacaacgacaacgagaagaagaccaccggcgggcggaacggatacggagccaag
ctcaccaacatcttctccacggagttcgtcatagagacagccgacgggcgtcgccagaag
aagtacaaacaggttttctctgaaaacatggggaagaagtcagagccccagattaccaag
tgcaagcagggggagaactggaccagggtcaccttcaagcctgatcttgccaagttcaac
atgacccatctcgaagatgatgttgtagccctcatgaggaagagagtagttgatatggcg
ggcactcttggcaacacggtgaaggttcaattggatggccagaagttgtcggtgaagagc
ttctctgactatgtggacctgtatatgaaatctgctaacagtgacagacctgacgctctc
aaaaaggcttatgagtatgtaaatgagcggtgggaggtgtgtgttactcaaagtgaaggg
cagtttcagcaggtcagcttcgtcaacggaattgcaaccataaggggtggaacacatgtt
gattatatcgccaaccaaattgccaactatgtgatgaccattgtcaataagaaaaacaag
catgcaaacatgaaagcgcataatgtgaagagccatttgtgggtcttcgttaatgcgctt
attgacaaccctgcattcgactcgcagaccaaggagaccttgacaactcgtcagggaagc
tttgggtcaaagtgcgagctttctcctaaattcttcaaggatgttgagaaaatcggtgtt
gtcagcaatgtcctttcctgggctgatttcaaattaagcaaagaacttaagaagactgat
ggaagtaagaagtcaagaatttctggactcacaaagcttgaagatgcaaatgaagctggt
gggaaggactctgacaagtgcaccttgatcctgactgaaggagattcggcaaaagctctt
gctatgtcgggcattgctgaagttgggagagatcactatggtgtgtttcctctcagggga
aagcttctaaatgtgagagaagcaagccacaagcaaataatggataacgctgaaattcag
aacataaagcaaatacttggtttgcagcatgggaagcagtatgacagcaccaaaggcttg
agatacggccatctcatgataatgacagatcaggaccatgatggttcccacatcaaaggg
ttgttgatcaacttcattcactcattctggccatctcttcttaaagttccatctttcctg
gtagagttcaccactccaattatcaaggcaacaaaaaacaataagacccaagcattttac
actataccagagtatgaagaatggaaaagaaaattaggagcaagtgcaagttcttggacc
ataaaatactataaggggttgggaacaagcacatccaaagaagctaaagaatacttttca
gatatcggaaaccacaagaaggattttgtctgggtagatgatcaagatggcaatgaaatt
gagttggcattcagcaagaaaaggattgctgataggaaacagtggcttacgaactttcag
cctggaacttaccttgaccacaaagagaaaaaaatcaagtaccgtgatttcatcaacaaa
gagctgattctcttctcgatggtggacctgcagcgatcaataccttcaatggtagatggc
tttaaaccaggtcagaggaagatccttttttgcgcattcaagaggaatcttgttaaggaa
actaaggttgctcagttctctggttatgtgtcagaacactcagcataccaccatggcgag
cagagtttagcaagcacaattgttggaatggctcagagttttgttggcagcaataacata
aacctttttttccctggaggccagttcggtaccaggtgtcagggaggcaaagatgctgcg
aatgctaggtacatcttcaccaaactgtcacatatcacacgttcgattttcccgaaggat
gatgacattcttctcaactatctgaatgatgatgggcagtcagttgaacccagctggtat
gtgccaatccttcccatggttttggtcaatggaagtgaaggaattggtactggatggagc
acatatattccaaactacaatcctagagacattgttgctaacctcaggcggttactgaat
gatgagtctactgtgccaatgcatccgtggtacagagggttcaagggttctattgtgaag
tcacataatgcaaaggtagctggtgccacatataccatcaccggcatcatagaagctgtt
gacagcactacattgaggattaccgaactgccaattcgccgttggactcaggattacaaa
gactttatagactctgtgacttttgatccaaaggacaaagacaaggaaacatttatcgag
gagttcacaatgcaaggtgatagtgacgatgtttactttgtgctcaaactaactgaagac
aacatgaataaggttatggaagaaggactggtgaaaaaatttaagctgacaacaacaatt
ggaacatcaaacatgcacttgtttgactcagatggcaaaattcggaagtatgacactcct
gagcaaatacttgaagagttctataaattaaggcttgaattctatgttaacagaaagaaa
gcattattgcaaaatatcaagctggacttgaagaagcatgaaaacaaaataaggtttatc
cgctgtgttgttgacaatgaaattgtagtaaataacaggaagagggcagatctatttctg
gagcttcgggagaagaatttcgatcctttcccgaagaaaaagaagaaagctgaaccagct
gctgtaggagctacagaagaggaggaaaatgaagaagagagtcctgaagctgcaaacgga
gttggtcctagtgattatgagtatctcctctcaatggcaatcggtactttaactttggag
aagatacaggagctcaatgctgagagagagaaattgatgaaagatgttgaggaactggag
aacactgcaccaaaatcgctttggttgagagaccttgacaccttagagaaagaactggat
gtgcttgatcaaattgatctagcagatgaggaggaaaggagaaagaagagggaaaagaac
actaataaaggactgaaagctgcccccaagaaacaacgcaagaatgctgcagttcaactg
ccaaaagtggaaagtgacacggaaggagatggtgctgaacctgtggttgcaaagcgtgga
gctcaacgaaaaaaaccagccaaaaaggtgaatggtgctgggtctgacgatgaagattat
gtagctgaaaatgctaaaccggaacaccaaaagaagaaacaaactaagaaggcaagtgct
cctgtggatgaagatgacatgcccacactaaaagatcgcatggccgcttttagtatcaat
gacttctctccggatagttctgccttggaaactgaaactacagaagaccagaatgaagac
aaagggccgaacggaccaagcagaagaggtagagtaaagaaggggttgtcatccttggca
gtgatttctgatgatgaggatgacgatgttgactttgccatggaagtcccagaagtccaa
gttgagaagaaaggtagaggaaggaagactgatgctgctgctacaaagccgaaggctgct
gccaccagaaagagggcgccagcgcagggcaaggccatgatgctcaagcccacagaggac
agcaacaccagcgccccatctcctgagaagaaggtccggaagatgagggagtctccattc
aacaaaaagagtggctcgatcttgcagagagcctctactgctgccgcatcaagctctgag
actaccgctgaggcttcaccaccatctggcagctctgcagagccagctgctgccccgcaa
cccaggaggacagccagggccaccaccagtaagcctgtgtacatctccgagagcgaccca
gaggatgaagtggtggagttaactgatgattcagacttcgacgtggatggtgactctgat
gacgagtga
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