Panicum virgatum (switchgrass): 120656929
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Entry
120656929 CDS
T07260
Name
(RefSeq) pentatricopeptide repeat-containing protein OTP51, chloroplastic-like
KO
K27936
pentatricopeptide repeat-containing protein, chloroplastic
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120656929
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120656929
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GFIT
Motif
Pfam:
LAGLIDADG_2
PPR_2
PPR
PPR_3
PPR_long
PPR_1
ARM_TT21_N
Ribonuc_red_lgN
Suf
Leuk-A4-hydro_C
Motif
Other DBs
NCBI-GeneID:
120656929
NCBI-ProteinID:
XP_039791100
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Position
1N:57379884..57382758
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AA seq
793 aa
AA seq
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MASASPCACGAPSPSLRCPLSLSLPFASFPPAVRLAAPPLLLRRIAVSRPRAASALEALV
MESDDEDEDEGEESEEYGAGLFQGEAWAAAADERDAVRSPELQVFELEELPEQWRRSRIA
WLCKELPAYKHSTFTRILNAQRKWITQDDATYIAVHCLRIRNNDAAFRVYSWMVRQHWYR
FNFALATRVADCLAREGKVEKCREVFDAMVKQGRVPAESTFHILVVAYLSVPGGRCFEEA
CTIYNQMIQMGGYKPRLNLHNSVFRALVSKTGGTAKHNLKQAEFVYHNIVTSNLAVHKDV
FVGLIWIHSYQDVIDRDRIKALRDEMKRAGYEETTDVLVSLMRAFSKEGDIKETEATWHR
LLQSGCELPAQAYICRMELYARTGEPMKSLEMFKEMKGRNVSPNVASYHKIIEIMAKARE
IETAERLMDEFVESHMKHLMPAFIDMMYMYLDLDMHDKLEQTFTKCLGQCRPNRILYTIY
LESLVRIGNIAKAEEIFGEMHKNGTIGTHAKSCNIMLRGYLSAEDYQKAESIYDLMCKKK
YDVPVDTLEKLQSGLLTSKKVVKPPKPVSMKLDEEQREILIGLLLGGTQIESHAQKGVHI
VNFKFQEDSNAHSVLRAHIHERFFEWLPSACRSFNDDSEIPYQFSTIPHAHFGFFADQFF
LKGQPVLPKLVHRWLSPRVLAYWFMFGGFRLQSGDIVLKVSGGNIDGIERIANSLQTRSL
TCKVKRKGRFFWIGFQGSSADSFWKIIVPYVLDSFTGSTTTMQESHSIGSDGSRDSDTSY
KDDTQRYNTETER
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcctctccctgcgcctgcggcgctccatccccgtcgctgcgatgccctctc
tccctgtcgctccccttcgcttcctttcctcccgccgtccggctcgccgccccgccgctt
ctcctgcgccgcatcgccgtctcgcgtccaagagccgcgtcagcactggaggccctcgtg
atggagtcagacgacgaggatgaggacgagggcgaggaatcggaggagtacggggcgggt
ctgttccagggcgaggcgtgggcggcggcggccgacgagagggacgcggtgaggtccccc
gagctgcaggtgttcgagctcgaggagctgccggagcagtggcggcggtccaggatcgcc
tggctctgcaaggagctccccgcatacaagcactccactttcacccgcatcctcaacgcc
cagcgcaagtggatcacgcaggatgacgccacctacatcgccgtccactgcctgcgcatc
cgcaacaacgatgcagctttccgggtgtacagctggatggtgcggcagcactggtaccgc
ttcaactttgcactagcgacaagggtggccgattgcttagccagagaaggcaaggttgag
aagtgccgagaggtgttcgatgcgatggtgaagcaaggccgggtgcctgctgaatccacc
ttccacatattggtggttgcatatctcagcgtgccaggggggcgttgttttgaggaggca
tgcaccatctacaatcagatgatacagatgggtggctacaagcctcgccttaacctgcac
aattcagtgttccgggcacttgtgagcaagacaggaggcacggcgaagcacaatctcaag
caggctgagtttgtttatcacaatatagtcacgagcaatcttgcagtgcacaaggatgtt
tttgtggggcttatctggattcacagctatcaagatgtcattgatagagacaggatcaaa
gctcttagggatgagatgaagcgagcggggtacgaggagactactgatgtgctggtgtca
ctgatgagggccttctccaaggaaggtgatattaaagaaacagaggcaacatggcatagg
cttcttcagagtggttgtgagctccctgctcaggcttatatctgccgaatggagctttat
gcgcggactggtgagcctatgaaatcccttgaaatgttcaaggaaatgaagggccggaat
gtatctcccaatgttgcatcgtatcataagataattgagataatggcaaaagctagagag
atagagaccgcagaaagactcatggatgagtttgttgaaagccatatgaaacatctgatg
ccagcctttattgacatgatgtatatgtatctagatcttgatatgcatgacaaattggag
cagacattcacaaaatgccttggccagtgtcgtccgaatagaatattgtacaccatctat
ctggaatcattggtgaggattggaaatattgctaaggccgaggagatctttggtgaaatg
cataaaaatgggacgataggtacccatgccaagtcttgcaacatcatgcttagagggtat
ctttctgcagaggactatcagaaagctgaaagcatttatgatttaatgtgcaaaaagaag
tatgatgtaccagtggatactttagaaaaacttcaaagtggtctcctcaccagcaagaaa
gttgtcaagccgccaaaacctgtgagcatgaaattggatgaagagcagcgtgagattttg
attggtttgctacttggaggcactcaaattgaatctcatgcacagaaaggggttcacatc
gtcaactttaagttccaagaagattccaatgctcattcagttctaagggcacacattcat
gaacgtttctttgaatggcttccttcagcatgcagatcattcaatgatgacagtgagatt
ccttatcaattttcaaccataccccatgcacattttggattctttgcagatcagttcttc
ctgaaaggccagccagttctcccaaagcttgtccatcgatggttatccccacgtgttctg
gcatattggttcatgtttgggggcttcagactccaatcaggtgatattgttcttaaggtc
agtggtgggaacattgatggcattgaaaggattgcgaactccttacaaacacggtcttta
acatgtaaagtgaagaggaaaggaagattcttttggataggttttcagggaagcagtgct
gactcgttctggaaaattattgtaccttatgtattggacagttttacaggttctacgact
acgatgcaggaaagtcatagcattggttcagatggttcgcgagatagtgataccagttat
aaggatgatacgcagaggtataatacagaaactgaacggtga
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