Panicum virgatum (switchgrass): 120657017
Help
Entry
120657017 CDS
T07260
Name
(RefSeq) trafficking protein particle complex subunit 11-like
KO
K20308
trafficking protein particle complex subunit 11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120657017
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Tethering complex
TRAPP complex II
120657017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Foie-gras_1
TPR_12
Gryzun-like
Gryzun
TRAPPC13_C
MIT
PE
Motif
Other DBs
NCBI-GeneID:
120657017
NCBI-ProteinID:
XP_039791198
LinkDB
All DBs
Position
1N:58472914..58479360
Genome browser
AA seq
1175 aa
AA seq
DB search
MEDYPEELRTPPLSLVSIVGCPELHPSISAALSSPQPPMNTLALPDFAKASVLARSAKAR
DPLAPPQAPAGILKKDWLLKHRTRVPAAVAALFRADQVSGDPAQWLQACSDLENLKSAIQ
GKNTKLVVVLVQAQASDELSEDVTVALRKRAEIDSKHLVVLVEHDETEWNRSLSKLENVF
AELCSSFYKEEGRRIKARIEKRNFSSVELSIRYCFKVAVYAEFRRDWPEALKFYEEGVRV
LREMIGTSMRLPPTQRLVEIKAVAEQFHFKISTLLLHAGKVVEAITWFRKHIRSYERVVG
TPEVAFLHWEWFSRQFLVFGELIETTSTTVPDTLSPRFGTADNVLTEWEFQPAYYYQLAA
TYLREKRYAIECSSSMANLTAEVNGIPESVMPSVYVGQYVRLFEQGDTVSVLPLSDAEYI
SYALSEAERFQDSYEIIALFRKAYESFQSLGATRMASACSRGMAIEYYAAGDFSNSKQLF
DGVAVLYRQEGWTTLLWENLGYLRECSRKLNSPQDFISYSLEMAASPLFSGTGEENRENK
IKSGPAGSPTISRRENIQQEVINVLERKQSPEGNDDGFNNAMEETTHLDIDQISPLRMVL
IASVAFHDQSVKPGSPLLVSVSLLSHLPSPVVVDQLEVQFNQSACNFVIHSTREDSPPLD
SDLHGQVQTTSLTLFTNKWMRLTHEIKSGQSGKLECLSVKATINKHLVICCHAESPASME
DFPLWKFEDQVETMPTKDNVLAFSGQKLIQVEEPDAQVDLVLNSAGPALVGEIFILPVTI
LSKGHAVHSGELKINLVDARGGGLLMSPREAEESESHHVELLGVSTVSDGKESKEEVDSI
RQIQSSFGVVSVPTLSVGDSWSCKLEIKWHRAKSVMLYVSLGFSLGSSEEEALHRLNVHR
SLQIEGQIPFLVTHQLLRPFRREPLLLSEIRSLGGEDQRCSLAMNESNMFIVNARNCTEI
PLRLHSMTIEPDDDGKQLCSVQQLSGISSEHVVIAPSEEYKGIFSVNPRAINSNFHLGEI
CLNWSRDSSLGDQESHVIMKQMLPEVSVEEPPLVVSMECPPYAILGIPFTFYVKIHNSTS
LLQEIKYSLVDSQNFVFSGAHNHAAFILPKSEHIVSHKLVPLGSGSQQLPRITVTSVRYS
AALTPSISAATVFVYPSEPKFNLETSCSTSDECVS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggaggactacccggaggagctgcggacgccgccgctgtctctcgtgtccatcgtaggg
tgcccagagttgcacccctcgatctcggcagcgctcagctccccgcagccgcccatgaat
accctggctctgccggactttgccaaggcctccgtcctggcccgcagcgccaaggcccgc
gacccgctcgcgccgccgcaggccccagcgggaatcctcaagaaggactggctcctcaag
caccgcacccgagtcccggccgccgtcgccgcgctgttccgtgccgaccaggtctcaggc
gaccccgcccagtggctccaggcctgctctgatctcgagaacctcaagtctgcaattcag
gggaaaaacactaaattagtggtggtcctagtacaggctcaagctagtgatgagctgagt
gaggatgtaactgttgccctgaggaaacgtgcggagattgattctaagcacttggttgtt
ttggttgagcacgatgaaacagaatggaacagatctctcagcaaattggagaatgtgttt
gcggagttatgttcatcattctataaagaggaagggcgaaggataaaggctcgcattgag
aagaggaacttttcttctgttgagctgagcatccgctactgcttcaaggttgctgtttat
gcggagttcagaagggattggccagaagcattaaagttctatgaggaaggtgttcgcgtt
ttgcgtgagatgattgggacttcaatgaggttgcctccaacccaacgcctagttgagata
aaagcagttgctgagcaatttcactttaagatatcaactttgctacttcatgctgggaaa
gtggtagaagcaatcacatggttccgtaagcatatcagaagctatgaacgggttgtcgga
acaccagaagttgcatttcttcattgggaatggtttagcaggcagttccttgtctttggt
gaactgatagaaacaacatctactactgttccagatacattgtctcctcgatttggtact
gcagacaacgtattgactgagtgggaatttcagccagcttactactatcagttagcagca
acttacttgagagagaagaggtatgccattgagtgctcgtcgtcaatggcaaaccttaca
gcagaagtaaatggaatacctgagtcagtaatgccttctgtgtatgttggccaatatgtg
cgcttgtttgagcaaggagatacagttagtgtgctacccctttctgatgctgaatacatc
agctatgctttgtcagaagcggaaaggttccaagattcttatgagataatagcattgttc
agaaaagcttatgaatcatttcagagccttggtgctacaagaatggcttctgcctgtagt
cgtggaatggccatagaatattatgcagctggggactttagcaattcaaaacaacttttt
gatggtgttgctgttctgtaccgccaagagggttggaccactttgctttgggaaaaccta
gggtacttgagagagtgctctaggaaacttaattctccgcaggattttatcagttattcc
ttagagatggccgcatcacctttgttttctggcactggagaggaaaatcgagaaaacaaa
attaagagtgggcctgcaggttctcctaccatttccaggagggaaaatatacagcaggaa
gttattaatgttttggaaagaaaacagtcaccagaaggaaacgatgatggattcaataat
gcaatggaagaaactactcaccttgatattgatcaaataagtccactaagaatggtgctt
attgcatctgtcgcttttcatgatcaatctgtaaaacctggttcacctctgcttgtcagt
gtgtcattgttatctcatcttccttccccagttgtggttgatcagctggaggttcagttc
aatcaatctgcctgtaactttgtgatacatagtacacgagaagattctccacctttagat
tcagatttgcatggccaagttcaaaccacttctcttacactcttcaccaataaatggatg
cgtttgacccatgaaataaaatcaggacagagtggaaagttagaatgtttgtctgtgaag
gcgacaatcaacaaacacctagtgatttgctgccacgctgaaagtcctgcttccatggaa
gacttcccattatggaaatttgaggaccaagtggagaccatgcccacaaaggacaatgtt
ctcgcattttctgggcagaaacttatccaagttgaagagccagatgctcaagttgatctt
gttttaaattctgctggtcctgcattagttggagagatatttattctaccagtgaccata
ttgtcaaaagggcatgcagttcattctggtgagctgaaaattaaccttgtcgatgccaga
ggtggtggtctgttgatgagtccgagggaagcagaagaatctgaaagtcatcacgtcgaa
cttcttggtgtctcaactgtgtcagatggcaaagagtcaaaggaagaggttgatagcata
agacagatccagtcctcatttggtgttgtatctgttcccacattgagtgtgggtgattcc
tggtcatgcaaactagaaatcaaatggcatcgggcaaaatcagtcatgctctatgtttcg
cttggtttctccttaggctcaagtgaggaagaagcactgcaccggcttaacgtgcataga
agcttgcaaattgaagggcagatcccctttttagtcactcaccagcttttgagaccattt
aggcgagaacccttgttgctatctgaaatcagatccttaggtggtgaagatcaaagatgt
tctcttgctatgaatgagtctaatatgtttattgtgaatgctagaaattgcaccgagatt
ccgctacgtttgcactcaatgactattgaacctgatgatgatggtaagcagctctgctca
gtgcaacagttaagcggaatttccagcgaacatgtggttattgctcctagtgaagaatac
aaaggaatattttcagtcaatccacgggctatcaattcaaacttccatttaggtgaaatt
tgcctgaactggtcaagagattcaagccttggtgatcaagagagccatgttattatgaaa
caaatgttacctgaggtcagcgttgaagagccgccgcttgttgtgagcatggaatgccct
ccttatgctatccttggaatccctttcaccttctatgttaagatccacaattcaacttct
ttgcttcaagaaatcaagtactcccttgttgattcccagaatttcgttttttctggtgct
cacaatcatgctgctttcattctgccgaaatcagagcacattgtcagccataagcttgta
ccgcttggttccggctctcagcagctgcctcggatcacagtaacttcggtgaggtattct
gctgcattgactccttcaatctcagcagcgactgtctttgtatatcccagtgagcctaaa
ttcaatttggaaactagctgttcaacatccgacgagtgcgtgagttaa
DBGET
integrated database retrieval system
