KEGG   Panicum virgatum (switchgrass): 120657076
Entry
120657076         CDS       T07260                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120657076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120657076
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120657076
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     120657076
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 Beta-prop_Vps41 Beta-prop_TEP1_C DUF445
Other DBs
NCBI-GeneID: 120657076
NCBI-ProteinID: XP_039791259
LinkDB
Position
1N:complement(59050820..59060467)
AA seq 1348 aa
MASPTGNPNPNPNPPFELGKLFRPPNPMPTATAAPIFPGAAGGPAGPPPPSGPYSYPPVT
PPFHRGPYLHYPQDPHAMPRPVVSFPMPNPNLNPNPSANPNAAAPGPNPGVRLMQLLGNS
GPTQLETAVSMPPPTSEFAQPLPAMPSAPPARMLSSTSSKVPRGRLLGGGERAVHDIDSR
LPGEAHPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSLLR
GHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDEENKPQITGKIEIAIQIVGDVE
AYHPRICWHSHKQEILFVGIGNCVLRIDTTKVGRGRDFAVEEPVKCHLEKLIDGVRLVGK
HDGDVTDLSISQWMSTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYSVAFLTAPER
PNHINLITAGPLNREIKIWASTNEDGWLLPSDSESWNCTQTLELVSSLEPRVEEAFFNQV
AVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHDSQTDG
EQVVQVYCVQTMAIQQYGLELSLCSPPTADTTGFGRDPAISRVYDAPPEVAGTESSTTSK
PPAVDQSAGNAATYSPIVASVNSEVVISCYLSAEFDPKPSAPPLAYSEGDGSVHLPSALL
ASKMEVPGSGSGAAPGTRDIDQSAFDYTTNRNMERDALKRQDTPMPMRKDVLVKGELRDG
HSDIAMLPNPRLMFQVGGNATHLVTPSEIISGTLSSTENNDASQSDGGKIQDVSSRSSRI
AEVEPKHIDESKPDQNSGLETVKESQIVCENMEKTRSLEQTVEMISERSVTTDKYSVEES
ELPSDKPDHTGVADENVIKRSVEMPEKSDYSSASREQSSSYTKEEKVLHPQTSGQPSPPV
SAFNSTESHEPLSSAYPPISSFPEVAATQGMLQQLIGMQKDMEKQLSTMIPASMAKESKK
LETSLGRSMEKSIKAHIDAFWVRLQEENTKREKADRERMQQLVTLITNSINKDIPANLEK
SLKKEISSLGPVVARAITPIIEKCLASVVSDSIQKGVGDKVCNQLDKSISGKLEATLARQ
IQMQFHTSVKQALQDALRTSFESLLVPAFEQSCKTMFEQVDGAFQKGMSEHTVAIQQQVE
AAHTPLALTLKETINSASSITQSFSSELLDGQRKLLALVASGNAKAHNTNSLHPINGPMG
GPQEVEAPLDPMKELGRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALLAMVPVPL
NQGVLLALLQQLAVDINNETSRKVQWMTDVAMAINPADPMIAVHVRPIFEQVYSQLVHQR
ALPTTSASDGTSIRVIMHVINSVLLSYK
NT seq 4047 nt   +upstreamnt  +downstreamnt
atggcgtctcccacaggaaaccctaaccctaatcccaatccaccattcgagctggggaag
ctcttcaggccaccgaaccccatgcccaccgccaccgccgcccccatcttccccggcgcc
gccggaggcccggcaggcccgccgccgccgtctggcccctactcctaccctccggtgacc
ccgcccttccaccgcggaccctacctgcactacccgcaggacccccacgccatgccccgc
cccgtcgtctccttccccatgccaaacccaaacctcaaccccaacccgagcgctaacccc
aacgccgctgccccgggccccaaccccggcgtgcgcctcatgcagctgcttggaaactcc
gggccgacccaactcgagactgccgtctccatgcccccgccgacgtcggagttcgcgcag
ccgctcccggcgatgccgtccgcgccaccggcgaggatgctgagcagcaccagcagcaag
gtgcccagggggcggttgcttggcggtggggaacgagcggtgcacgatattgactcgagg
ttgcctggggaggcgcatccaccacagctggaggtgacaccgatcaccaaatacacgtcg
gatccggggctcgtgctgggcaggcagatcgcggtgaaccgaacgtacatcgtgtatggg
ctcaagctcgggaacatccgcgtgctgaacatcaacaccgccctccgctcactcctccga
ggccacacacagagggtgacggacatggctttctttgctgaggatgtccatcgattggca
agcgcgagcgtagatgggcggatatatgtgtggaggattgatgaggggcctgatgaggaa
aataaaccacaaattactggaaagattgaaattgccatccaaattgtaggcgatgttgaa
gcttaccatccaaggatatgttggcactcacataagcaagagattctgtttgttggaatt
ggaaactgtgtgttgagaatagacacaactaaagtgggaagaggaagagactttgccgtg
gaagaacctgttaaatgtcatctcgagaaacttattgatggtgttcgcttagttggtaag
catgatggcgatgtgacggatttgtccatttctcaatggatgagtacccgcttggcctca
ggatcaaaggatggcacggtaaagatctgggatgatcgcaaaccagttcctttgtcaatt
ctgaagccacatgatggccaagctgtttactcagttgctttccttacagcacctgagcgg
ccaaatcatataaatctaattacagcgggccctctgaaccgagaaattaaaatttgggct
tctactaatgaagatggttggttgttgccaagcgattctgagagttggaactgtactcag
accttggaactagttagttctctggagcctagagtggaggaggcatttttcaaccaggtc
gcagtgctgcctcaagcgagcctgattttgcttgcaaatgctaaaaagaatgctatttat
gctgtacatgttgagtatggcccagatcctgcctctactcgcttggactatatagcagat
ttcacagttgcaatgcctattttaagcctcactgggacacatgatagccaaactgatggt
gaacaagttgttcaagtctattgtgtccaaacaatggccattcagcaatacggattagag
ttatcactctgctcgcctcctacagctgatactactgggtttggaagagatccagctatt
tcccgtgtttatgatgcacctccagaagtggcaggaacagagtcgtctacaactagtaaa
ccaccggctgttgaccagtctgcaggtaacgcagctacctattctcctatagttgcttca
gttaattcagaagtagttatttcttgttatttatcggcagagtttgatccgaaaccatca
gctccgccgcttgcatactcagaaggtgatggttctgtgcatctcccatctgcacttctt
gcatcaaagatggaggttccaggatcaggatcaggagcagcacctggaactcgtgatata
gatcaatcagcttttgactatacaacaaacaggaacatggagcgtgatgctttgaaaagg
caagatacacccatgcccatgagaaaggatgtcttagtaaagggtgagctaagagatggt
cacagtgatattgcaatgcttccaaatccccgtttgatgtttcaggttggagggaatgct
acacacttggttactccatctgaaattatatcaggcactctctcatctactgaaaacaat
gatgcctctcaatctgatggaggaaaaattcaagatgtttccagcagaagctctcggatt
gcagaagtggaaccaaaacatattgatgagagtaagccagatcaaaattcaggacttgaa
actgtcaaggaatctcagattgtttgtgagaatatggagaaaactcgttccttggagcaa
actgttgaaatgatcagtgagcgctcagtgacaactgacaagtacagtgtggaagaatca
gaactgccatctgataagccagaccatacgggcgttgctgatgaaaatgtcataaaaagg
tctgtggaaatgcctgagaaaagtgattactcctctgcttctagggagcaatcatcttcg
tatacaaaggaggagaaagttttacaccctcaaacatctggtcagccatctcctcctgtt
agtgctttcaactcaactgagtcacatgagcctttgagctccgcatatcctcctatcagc
tccttcccagaagttgctgccacacaagggatgctacaacagctcatagggatgcagaag
gacatggaaaagcagttgagtactatgattcctgcctcaatggcaaaggaaagcaaaaaa
ctcgagacatcattagggcgcagcatggagaaatctatcaaggctcacattgatgccttt
tgggttcgtctccaggaggaaaacactaagcgtgaaaaggctgacagagagcgaatgcag
cagttggttactctcattacaaactcgataaataaggacattcctgctaatctggagaag
tcacttaagaaagaaatctcgtcacttgggcctgttgttgctcgagcaattacacctatt
attgagaagtgcctagcctctgtggtttctgattcaattcagaaaggggtgggtgacaag
gtgtgcaatcagctggataaatctattagtggaaaacttgaagctacacttgccaggcaa
atccaaatgcagttccatacatctgtaaaacaggctcttcaggatgctttgcgcactagc
tttgaatcattgcttgttccagcatttgaacaatcatgcaagacaatgtttgagcaagta
gacggtgcatttcagaaaggaatgtctgagcacacagttgctattcagcagcaagttgag
gcagcacatactccattagcgttaacattaaaggagaccatcaattctgcatcatcaatc
acccagagtttttcgtcagagttacttgatggccagcgcaagctattggcacttgttgct
tctgggaacgccaaggcacataataccaattcgttgcaccccattaatggtcctatgggt
ggcccccaagaggttgaggctccgttggatccgatgaaagagctgggcaggctgatatct
gaacgcaagtttgacgaggcatttacaatggccctacaaaggagtgatgtttccatagtg
tcgtggctatgctctcaggttgatttgcgtgcattattggcaatggtcccagtaccactt
aatcagggggttctcctggccctattgcagcagctagcagttgacataaacaatgagaca
tcacgtaaagttcaatggatgacagatgttgccatggcaatcaatccagcagacccgatg
attgccgtgcatgtgcgacccatctttgagcaagtctacagccagttggtccaccagcgg
gcactccccaccacgagcgcatcagatggcaccagcatccgcgtgataatgcatgtaatt
aactcggttctgcttagctataagtga

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