Panicum virgatum (switchgrass): 120657083
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Entry
120657083 CDS
T07260
Name
(RefSeq) 26S rRNA (cytosine-C(5))-methyltransferase NOP2B-like
KO
K14835
25S rRNA (cytosine2870-C5)-methyltransferase [EC:
2.1.1.310
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120657083
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.310 25S rRNA (cytosine2870-C5)-methyltransferase
120657083
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120657083
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
RsmF-B_ferredox
Methyltr_RsmF_N
TRM5-TYW2_MTfase
Motif
Other DBs
NCBI-GeneID:
120657083
NCBI-ProteinID:
XP_039791271
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All DBs
Position
1N:59129033..59134496
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AA seq
721 aa
AA seq
DB search
MAKGPKSKLQPPPAPAGKKGSKAAPPPKAAKRVPKKQMLLESDDDSDTEQQQLQEEDSDL
DIPSDSDAEELSGSDAEADELSGSDADADGGSSSGSGDEGEEDEEEEEGDDDSDDDPLAD
DFLADSDEGSEGGDSGVESDESDDLEAKSRAIDEQRLKAEIDAAEDLKINIRSESDEFRL
PTAEELEEEAHLPPNLPNLKRRISEIVRVLSNFNKLRQKDVPRKDYINQLKTDIMSYYGY
NDFLVEALIEMFPAVELIELLEAFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLDPIGK
WSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTT
YIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGINSVDRVL
LDAPCTGTGTIWKDPQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDANSKTGGYIVYSTCS
IMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFHTSLDKTRRFYPHVNNMDG
FFVAKLKKLSNTIPMMAESSKASDSAAERADLTGDDEDKKAVLDEQEKGVPDKDEKAVPM
KNHKDTKFKTNKGTSVAKATKGVPDRPAKHPENHKKDAMETDGPEKTETNGDGKEVHLVQ
NKKKGPKRKIASDRTKKLDPKSTSGIKEKKPVSDKKRKKKWQFKLRRDWEAGKKSDKRRK
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggggccgaagagcaagctacagccgccgccggcgcccgcggggaagaagggg
agcaaggcggcgcccccaccgaaggcggcgaagagggtgcccaagaagcagatgcttctc
gagtccgacgacgactcagatacggagcagcagcagctccaggaggaggactccgacctc
gacatcccctccgattccgacgccgaggagctctctgggtcggacgctgaggccgatgag
ctctcaggctcggacgccgatgctgacggtggctccagcagcggcagcggcgacgagggg
gaagaggatgaagaggaggaggagggagatgatgatagcgatgacgacccccttgcggac
gacttcctcgctgatagcgacgaaggaagcgagggtggtgactctggagtggagtcagat
gagtcagatgacctcgaggccaagtcacgagcaattgatgagcagaggctgaaggcagaa
atagatgcagctgaggatcttaaaataaacataagatcagaatctgatgagttcagatta
ccaactgccgaggaactggaggaagaagcgcatttaccacctaacctaccaaatctcaaa
aggaggatatcagaaattgtccgagtgctctcaaacttcaacaagctgaggcagaaagat
gtcccacgaaaagattacatcaatcagctcaaaactgacatcatgtcatactatggatat
aatgattttcttgttgaagcattgattgagatgtttcctgctgtcgagcttattgagttg
ctggaagcttttgagaaaagaccacctgagtgcttgcgaacaaatacgttaaagaccagg
aggagagatcttgctgctgctcttataccaagagggtttaatctggacccgataggcaaa
tggtcaaaggtaggattagttgtctatgactccaccatttctgcgggtgcaacaactgaa
tatatggctggacattacatgaaacaaggtgctagttctttcttaccagtgatggcactt
gctccccaggagaaggagcgaattgttgatatggctgctgcacccggtggcaagactact
tacattggtgctcttatgaagaatactggaatcatctatgcaaatgagttcaatgagaaa
aggttgcatggactgttgggaaacatccatcgcatgggtgtgacaaataccatagtttgt
aactatgatggtaaagagttacctaaagttctcgggataaattcggttgacagagtattg
ctggatgctccctgcacaggaactgggaccatttggaaggatccacaaataaaaacatca
aaggacattgaagacatcaggaactgtgcctttgttcagaagcaattgctgcttgctgct
attgatttggttgatgccaactccaaaactggtggttacattgtttattcaacttgttca
ataatgatcccggagaacgaggcagtgatagactacgcacttaaaaagagaaacgtaaag
cttgtgccttgcgggttggattttggacgcccaggattcattcggtaccgggagcatcgg
tttcatacttcgttagacaaaacaagaaggttttatcctcatgtcaacaatatggatgga
ttttttgtggctaagctgaaaaagttgagcaatacaattccgatgatggctgagtcgtca
aaagcatctgatagtgcagctgagagggctgatcttactggggatgatgaagacaagaaa
gctgttcttgacgaacaagagaaaggtgttcctgataaagatgagaaagctgtaccgatg
aaaaatcataaagatactaagtttaagactaataaaggaacaagcgtcgcaaaagcgact
aaaggtgtacctgacaggccagcaaagcatcctgagaaccataagaaggatgcaatggaa
actgatggccctgaaaaaacagaaacaaatggagatgggaaagaagtgcaccttgtgcaa
aacaaaaagaaaggccccaaaaggaagattgcttctgatagaaccaagaaattggacccc
aagagcacctcgggcataaaagagaaaaaaccagtgagtgacaagaagcggaaaaagaag
tggcaattcaagttgaggcgagactgggaagctggaaagaagtctgacaagaggaggaaa
ttatga
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