Panicum virgatum (switchgrass): 120657117
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Entry
120657117 CDS
T07260
Name
(RefSeq) probable methionine--tRNA ligase
KO
K01874
methionyl-tRNA synthetase [EC:
6.1.1.10
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00450
Selenocompound metabolism
pvir00970
Aminoacyl-tRNA biosynthesis
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
120657117
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120657117
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120657117
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120657117
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.10 methionine---tRNA ligase
120657117
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (U)
120657117
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
120657117
Prokaryotic type
Other AARSs
120657117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1g
tRNA_bind
Anticodon_3
tRNA-synt_1
Hormone_recep
tRNA-synt_1e
Anticodon_1
CoV_peptidase
DUF6664
Motif
Other DBs
NCBI-GeneID:
120657117
NCBI-ProteinID:
XP_039791309
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All DBs
Position
1N:complement(59544660..59550521)
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AA seq
801 aa
AA seq
DB search
MASPSSPPKLPIPGRRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYI
CGTDEYGTATETKAMEEKCSPKEICDKYHAIHDKVYKWFDIKFDKFGRTSSAQQTEICQA
IFHKLMKNNWLTENTMQQLYCDTCQRFLADRLVEGACPTQGCTNKAARGDQCDQCSHMLN
PTELIDPKCKVCKNTPRIRETDHLFLELPLLKTKLVDYINDTSVAGMWSQNAIQATNAWL
KEGLKPRCITRDLKWGVPVPMEKYKDKVFYVWFDAPIGYVSITASYTPEWEKWWKNPDNV
ELFQFMGKDNVPFHTIMFPSTLLGTGENWTMMKTISVTEYLNYESGKFSKSKGIGVFGND
AKDTNIPPEVWRYYLLTSRPEASDTLFTWTDLQAKLNSELLNNLGNFINRVLSFIAKPPG
AGYDSIIPDAPGAESHPSTCELAEKTSKRVEQYLDAMEKVKLKQGLKSAMGISSDGNAYL
QESEFWKLYKEDPVSCAIVIKTSVGLVYLLTCLLEPFMPSFSNEVLRQLNLSPEENLSFS
DEKGEIVKAKTPWDFLPAGHKIGRPTPLFEELKDENVSEHRKKYAGSQAERRSQEVADAE
AMKISNQLKSTTLSEGGSKKEQKKQSGNSKSKAAEAEVSVVKLDIRVGLIRKAEKHPDAD
SLYVEEIDVGEEAPRTVVSVLVKYIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASS
DDHTKVELVEPPVDAAVGERVTFAGYSGEPEASLSGKSKVWEKLAADLHSNGELLACYKD
VPFTTSAGVCKVKTLANAEIR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccgtcctcgccgccgaagctgccgatccccggccgccgcaacatactcatc
accagcgccttaccctacgtgaacaacgtcccgcacctcgggaacatcatcggatgtgtg
ctgagcgccgacgtgttcgcgcgctactgccggctgcgcgggtacaacgcgctctacata
tgcgggacggacgagtacgggacggccacggagacgaaggccatggaggagaagtgctcg
cccaaggagatctgcgacaagtaccatgctatccatgacaaggtttacaagtggtttgac
ataaaatttgacaagtttggacgaacgtcctctgctcagcagacagaaatatgccaagct
attttccataaattgatgaaaaacaattggctcacagaaaataccatgcagcagctttat
tgtgatacctgtcaaagatttttggcagacagacttgtagaaggagcatgccctacacaa
gggtgtactaataaagctgcgcgaggtgatcaatgtgatcagtgcagccatatgttgaat
ccaactgaactaattgatccaaagtgtaaggtctgcaagaatactccccgcattcgtgaa
acagatcacctattcttggaactccctctattaaaaacaaagttggtagactatatcaat
gatacttcagtagctggtatgtggagtcaaaatgccattcaagcgacaaatgcatggctg
aaggaaggactaaagccacgctgtatcacaagagatcttaaatggggagttcctgttcca
atggagaagtacaaagataaggttttctatgtctggttcgatgcgccaattggctatgtg
tctatcacagcatcttatactccagaatgggagaagtggtggaagaatcctgataatgtg
gaattatttcagttcatgggcaaagacaatgtgccatttcacacgatcatgttcccttcc
acactactaggaactggtgaaaattggacaatgatgaagaccattagtgttactgaatat
ttaaattatgaatcaggaaaattctccaagagtaagggtattggagtttttggtaacgat
gcaaaggatacgaatattcctcctgaagtgtggcgatactacctgcttacgagtcgccca
gaggcatcagatacactctttacatggaccgacttgcaagccaaattgaacagcgagttg
ttaaataacttgggaaacttcatcaatcgtgtgctaagctttattgcaaaaccacctgga
gctggatatgattcaattatacctgatgcccccggtgccgagtcacatccatcgacatgt
gagcttgcagaaaaaaccagtaaacgggttgaacaatatcttgatgccatggaaaaggtt
aagctgaaacaaggactgaagagtgcaatgggtatctccagtgatggaaatgcttatttg
caagagagcgaattttggaaactttataaagaagatccagtaagctgtgcgattgtgatt
aaaacttcagttggtcttgtgtatctccttacctgcctgctggagcctttcatgccttcc
ttttctaatgaagtgttacgtcaattaaacctgtccccagaagaaaatctctcattcagc
gacgaaaaaggagaaatagtgaaggcaaaaactccttgggattttctaccagcagggcac
aaaatagggaggcctacacctctgtttgaggaattgaaagatgaaaacgtgagtgagcat
aggaagaaatatgcaggaagtcaagctgagaggcgctcacaagaagttgctgatgctgaa
gccatgaaaatttctaaccagctcaaaagcaccacattatctgagggaggctcgaaaaag
gaacagaagaaacagtctggtaactcaaaatctaaggcagcagaggcagaagtgtctgtt
gtaaagttggatattcgagtggggcttatcagaaaagcggagaagcatccagatgctgat
tccctgtacgtagaggaaatcgatgttggagaggaggctccaagaacagtggttagcgtc
cttgtcaaatacattcctcttgaagaaatgcagaaccggaaagtgtgcgttctttgcaat
ttgaaaccagtggcaatgcgtggtataaaatcacatgccatggttctggctgcttcaagt
gacgaccataccaaggtcgaactggtcgagccaccagtggatgctgccgtgggggagagg
gtcaccttcgctgggtactcaggtgagcctgaggcttctctcagtggcaagagcaaggtc
tgggagaagctagccgctgaccttcacagtaacggcgagcttttggcgtgctacaaagac
gtgccattcactacttcggctggagtgtgcaaggtgaagacactagcaaatgcagaaatc
cgctag
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