Panicum virgatum (switchgrass): 120657146
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Entry
120657146 CDS
T07260
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23-like
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120657146
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
120657146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
120657146
NCBI-ProteinID:
XP_039791342
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All DBs
Position
1N:complement(59788217..59806961)
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AA seq
1612 aa
AA seq
DB search
MDGGHGLRQPMSPATSASAVVPQQRQMQLHHHSARPAIADLFTLYLGMNSKQRAEDPSRE
SSNKLQKRVTALNRDLPPRDEQFISDYEQLRMQFPDQEQLQAVTESVLISFVLQCSSHAP
RSEFLLFATRCLCARGHLRWDSLLPYLLNAVSSVEAPVGQGVPVTSGGPVTPSSSVITMP
NAPNFHPSNPASPLSVMNTIGSPTQSGIDQPAGANVSPIKAAEFSSSAQLGAAARGDQSR
RGVEIGYLHHLSCRILLAGLESNLKPATHAVIFQHMVNWLVNWDRPHNMDEADAMPTWRL
EKPLHEWMHLCLDVIWILVNEEKCQIPFYELVRCNLQFLENIPDDEALVSIIMEIHRRRD
MVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVTNLRYSPITYPSVLGEPLHGEDLA
NSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRLQPQPSSTPGAVFSPDMIG
EAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQI
LRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKTLDANNIGPQSILLDF
ISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTNLDERATGMF
WVLSFTMAQPACEAVMNWFTSAGMADLIQGPNMQPNERIMMMRETYPLSMSLLSGLSINL
CLKLAFQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVS
LLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLK
DFFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTW
SEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSH
SFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQFEVQ
RGHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRLVISLLEKPELQQR
VKAFCSSRSPEHWLKNQHPKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRL
IENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKTP
FSESFAKYLVSSNSSVCPPPEYFANLLLNLVNNVIPPLSSKSKSNPADTTRSTFNKHHVS
SQPGGIGNNDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVSAAQIVSSLVQIIAHVQAM
LIQSNSGQGMSGGLGQSSGLPTSPSGGGAEPAGSNQTNSAASGINATNFVSRSGYSSQQL
SVLMIQACGLLLAQLPPEFHMQLYSEAARVIKDCWWLADSSRPIKELDSAVGYALLDPTW
ASQDNTSTAIGNIVALLHSFFSNLPQEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLP
RLAFARPLFMKTLALLFNVLGDVFGKNSQVPNPVEASEITDIIDFLHHAVMYEGQGGPVQ
STSKPKLEILTLCGKVIEILRPDVQHLLSHLKTDPNCSIYAATHPKLVQNTS
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgggcacgggctgaggcagccgatgtctccggcgacatcggcctcggcggtg
gtgccgcagcagcggcagatgcagctccaccaccactcggcgcggccggcaatcgccgat
ctcttcaccctatacctcggcatgaactcgaagcagcgagcggaggatccatcgagagag
agctcgaacaagctgcagaagagagtgactgctctgaacagagatctgcctccccgtgat
gagcagttcatttcagattatgagcagctgcgcatgcagttccctgaccaggaacagttg
caagcagtcacagaatcagttctgatctcctttgtgctgcagtgcagtagccatgcacca
cgatctgagtttttgctctttgctacacggtgcttatgtgctcgaggccaccttagatgg
gacagcctccttccatatctgcttaatgctgtttcctcggtggaggcgcctgtggggcaa
ggagttcctgtgaccagtggtggtcctgtaacgccttcttcatcagttattaccatgcca
aatgctccaaactttcatccttcaaacccagcttcacctttgtcagtaatgaacaccata
ggatcccctactcaatccggtattgaccaaccagcaggtgcaaatgtgtcaccaattaag
gcagctgaattctccagctcagctcagcttggtgctgcagcaagaggtgaccagtctcgc
aggggagtagaaattggctatctgcatcatctgtcctgtaggatacttttggcagggctg
gagtccaatttgaagccagctacccatgctgtgattttccagcatatggtaaattggctg
gttaactgggacaggccacacaacatggacgaagctgatgcaatgccaacttggaggctg
gaaaaacctttacatgaatggatgcatctatgcttggatgttatatggattttagttaat
gaagagaaatgccagattcctttctatgagcttgttcgctgcaacttgcagtttctcgaa
aacattcctgatgatgaagcattagtcagtataatcatggagatccacaggaggagggac
atggtttgcatgcacatgcaaatgttggatcaacaccttcattgtccaacatttgcaact
catcgtttcttatcacaatcctacccaagcatagctggtgaatctgttactaatctgcgt
tattctcccattacataccctagtgtattgggagagccactacatggagaggatcttgca
aactccattcctaagggtggtttagactgggaacgagctcttcgttgcttaagacatgct
ctccgcacaaccccatcaccagactggtggagacgtgttcttctcgttgccccttgttac
agattacagcctcaaccatcatcaactcctggagctgttttctcacctgatatgattggt
gaggcagttgctgacaggacaatcgaactcttgaggcttacgaattcagagactcagtgc
tggcaagattggcttttgtttgccgacatatttttcttcctaatgaaaagtggatgcatt
gacttccttgattttgtggataagcttgcttctcgagtaacaaatagtgaccaacagatt
ctacggagtaatcatgtcacttggttgcttgcacagattatccgcattgagattgtgatg
aatactcttagttcagacccaagaaaggtggaaaccacaagaaaaataatttcattccat
aaagaagacaagacccttgatgccaataatattggccctcaaagtattcttcttgatttc
attagtagcagtcagactctgcgcatttggtctttcaatacttcgatcagagagcatttg
aacagtgatcagcttcagaaaggaaaacaaatagatgagtggtggaaacagatgacaaaa
gcttctggtgagcgaatgatagactttactaacttggatgaacgggcaacgggcatgttc
tgggttctctccttcactatggcgcaaccagcttgtgaagcagtaatgaactggtttacg
tcagctggaatggcagatttaattcaggggcctaatatgcagccaaatgaaagaataatg
atgatgcgtgaaacttaccctctgtcaatgtcattgctttctggtttgtctattaatctt
tgtctgaagcttgctttccagcttgaagagactatatttcttggccaggctgtacctagc
attgctatggtggaaacctatgtgagattactgctaataacgcctcattcattattccgt
ccccatttcacaacattaacccaaagatctccatctattctgagcaaatctggcgtctct
ttgctcctacttgagatactaaattacagactacttcctctatataggtatcatggaaaa
agcaaggcattgatgtatgatgtcacaaagataatatcaatgattaagggtaaacgtgga
gagcatcgtctttttagattagctgaaaatttgtgcatgaatctgattctctcgctgaaa
gacttcttttttgtgaaaaaagaactgaaggggccaactgagtttactgaaactcttaac
cgcataacgataataagtcttgctatcaccatcaagacacgtggcattgctgaggttgaa
cacatgatttatcttcaaccattgctagagcaaattatggcaaccagtcagcatacctgg
tcggaaaagacattacgttatttccctcctcttattcgcgactttttaatggggagaatg
gataagaggggccaagctatccaagcatggcagcaggcagaaacaactgttattaaccaa
tgcaatcagctgctctcaccatctgctgagccaaactatgtcatgacttatttgagccac
agtttccctcagcaccgtcaatatctttgcgctggtgcttggatgctgatgaatggacat
cttgaaatcaacagtgcaaatcttgctcgtgttttaagagagttttcacctgaggaagtt
acagcaaatatctatacgatggtcgacgttcttctgcatcatatccaatttgaggtgcaa
agaggccatctagcacaggacttactatccaaagcaatcacaaatctttctttctttata
tggacacatgagcttcttccactggatattttactgctagctcttattgacagggatgat
gatccttatgctttacgccttgtgataagtcttcttgaaaagccagagcttcaacaaaga
gttaaggcattctgcagttctcgttctccagagcattggctcaaaaatcaacatcctaaa
agagttgagctccagaaagcgcttggtaaccatctatcatggaaggaccgttatcccccc
ttcttcgatgacattgctgcacgcttgcttcctgttatcccgctgattatttataggctt
attgagaatgatgctaccgacattgcagacagagttcttgcattttattcttccttgctt
gccttccacccgctaaggtttacatttgtacgtgatattcttgcatatttctatggtcat
cttccaatcaaactgattggtaggatcctcaacttgctgggtgttagcactaagactccc
ttctcagaatcttttgctaaatatttagtgtcctctaattcatcagtttgtccaccaccg
gaatactttgccaaccttttgctaaacctggtcaataatgtcatacctcctttgagtagc
aaatccaaatcaaacccagcagacacaacacgctcaactttcaacaagcatcatgtgtct
tcacaacctggtggaatcggtaacaacgatggtcagagggcattttatcagaatcaagat
cctggctcgtatacgcagcttgttttggaaacagcagctattgagattctctcacttcct
gtgtctgctgctcaaatagtatcctcattggttcaaataatagcacatgtacaagcaatg
cttatacagtcaaatagtgggcaaggaatgtcaggtggtctggggcaaagttctgggctg
ccaacttctccttcaggcggaggtgctgaacctgcaggttccaaccaaacaaacagtgct
gcaagtgggatcaatgccactaactttgtttctaggagtggctactcttcccaacaattg
tctgttttgatgattcaagcatgtggtcttttgttggcacaactcccaccagaattccac
atgcaactatactcagaagcagctcgtgtcataaaagattgctggtggctagctgatagt
tcgaggcctattaaagagcttgactctgctgttggctatgcattgcttgatcctacatgg
gcttctcaagacaacacatcaacagccataggtaacattgtcgccctgctgcactcattt
tttagcaatcttccacaagaatggctggaatctacccatactgtcataaaacaccttcgg
ccagtcaattcagttgccatgctaagaatcgccttccgcatattgggtcccttgctacct
cgtttagcctttgcccgacctttgttcatgaagaccttggcgttactgttcaatgttttg
ggtgatgtatttggtaagaactctcaggtcccgaatcctgtggaggcttcagaaattaca
gatataattgacttcttgcatcatgctgtgatgtatgaaggccaagggggtcccgttcag
agcacaagcaaacctaagctggagatactaacattatgtgggaaagttatagaaattttg
aggccagacgtgcaacatcttctctctcacctgaaaactgatcccaactgctcaatatat
gcagcgactcatccaaagctcgttcaaaacacatcctaa
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integrated database retrieval system
