Panicum virgatum (switchgrass): 120657174
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Entry
120657174 CDS
T07260
Name
(RefSeq) ATP-dependent RNA helicase DEAH13-like
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120657174
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120657174
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
Helicases
120657174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
DHX37_C
AAA_22
ATPase
nSTAND3
AAA_19
PhoH
TNP-like_GBD
Kinetochor_Ybp2
Motif
Other DBs
NCBI-GeneID:
120657174
NCBI-ProteinID:
XP_039791375
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All DBs
Position
1N:60108838..60115089
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AA seq
1290 aa
AA seq
DB search
MEDSNALILPCKRKNKGQGKAKDGKKAKKEDPKMSKTKLKKLQKLEEEKQKKLLQAKSIE
ILQKHKISEDAYSLLHASGTIGQAETLKEKRRRAVQLSKAGLDVPEELSLFKRSSDKKIS
ENSDIVEQILPAEFVEPAKSEDPCRELKHNMKNDSMKAMECQPKMDVEVSIPDPKTEGPS
DNAHLLANQKIQPSIPSCSGSELDLQGKGPGQGQREAAVQECFGPPIVVPVSRPHEVEKA
RRDLPIIMMEQEIMEAIYENSIVILCGETGCGKTTQVPQFLYEAGFGTSDRDDRRGMIGI
TQPRRVAVLATARRVSYELGLKLGREVGFQVRHDKLVGSNCSIKFMTDGILLRELQDDFL
LKRYSVIILDEAHERSLNTDILIGMLSRIIKGRKSLYADQQYKIRSGQKIRPEDMISHLK
VVLMSATLQLKDFISNRRLFDVIPPAVKVPVRQFPVTVHFSKRTHDDYLGQAYKKVMSIH
KRLPPGGILVFVTGQREVDYLCKKLRRASKAQTAKKPEKIDGNDNGPCPDVGDKEILEAY
DIDRNKSEHRDDIFCLYDDDDMYPGPDSGSSDNETESEMNTDTDDEESVTYETTEEDAPV
LAFLKNTENSSMLKASFGALSGISGVPESVEKSSDATSEEKTSPSAHYFSKCTERIPLSH
GRLRVLPLYAMLPASQQLQVFQDIPEGERLVVVATNVAETSLTIPGIKYVVDTGKEKVKN
YDHATGMSSYEVQWISKASASQRAGRAGRTGPGHCYRLYSAAAYGKDDLFPEFAEPEIKK
IPVEGVVLMLKFMGICKVVNFPFPTPPNKESLVEAEHCLKTLEALENSADGKLTPMGKAM
AQYPMSPRHSRLLLTVIKILKSQQGLARSNFILGYAAAAAAALSFTNLFLKQSDECDING
ESEENNANPEANDPCERKRQKKHKAMVREAQENFCNPSSDALTIARALQFFELSESPVEF
CRINSLHFKTMEEMSKLRKQLLRLTFHHSKFCKEFAWNSGDSDDVEQAWRSESSKRPLQI
NEEEILGQGICAGWVDRVARRNHIYSRSSRDDQKVRAVRYQSCALNDTIYLHRSSSVAQV
APELVVYSELLNTKRLYMHGVTSIKPGWLLKYASSLCTFSAPLEDSKPYYDPLNDQVYCY
VSPIFSRHNWQLPLHSLPIQDSTSRLKVFACALLKGDVLPCLRNVKDFLALSPSFVFGPA
SQRRVGDLLARMRTDKKLKIGQYISRKLIDSPAALRDAWKVDPNFLYPEIKAWYQDRFHS
HFDVKWEQMHQEVLLEGHELFPKRSKKVKG
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atggaggatagcaacgccctgattttgccctgcaagaggaagaacaaggggcagggcaaa
gccaaggatggtaagaaagctaagaaggaggacccaaagatgagcaagactaagctaaaa
aagctgcagaaattggaggaggagaagcaaaaaaagttgctgcaagctaaaagcatcgag
attttgcagaagcacaagatctcagaagatgcatattcactgctgcatgcttcagggact
attggtcaagctgagactttgaaagaaaaacgtaggcgtgccgtgcagctgtccaaggct
ggtttggatgttcctgaagaactctcgctattcaagagaagcagtgataagaaaatttct
gaaaacagtgacattgtggagcaaattttgccagccgagtttgttgagcctgctaaaagt
gaggatccttgtagagaacttaagcataacatgaagaatgattcaatgaaagctatggaa
tgccaaccaaagatggatgttgaagtaagcattccagatccaaaaactgaggggcctagt
gataatgctcacttgttggcaaatcagaaaattcaaccttcaattccaagttgctctgga
tcagagctagatttacagggtaaagggccagggcaagggcaacgggaagctgctgtgcag
gagtgcttcggtcctccaattgttgtgcctgtgtcaagaccacatgaggttgagaaggca
aggagagatctcccaataataatgatggagcaggaaataatggaagctatctatgaaaat
tctatagtaattctttgcggtgaaacaggctgcggtaaaactactcaggtccctcagttc
ctgtatgaagctggctttggcacaagtgatcgagatgatagaagagggatgattgggatc
acccaaccacgacgtgttgctgttcttgccacagctaggagggtgtcctatgagctaggg
cttaagctggggagagaagttggttttcaagttcggcatgacaaattggtgggaagtaat
tgctcaatcaagttcatgacagatggtattttgctgcgagagctccaggatgattttcta
ttgaagcgctattcggtgatcatattggacgaggcacatgaaaggagcttgaacacagat
atacttattgggatgctttctagaataataaagggtcgcaagagtttatatgccgatcag
cagtataaaatacggtctggacagaaaatcaggccagaggatatgataagtcatctgaaa
gtggtgctcatgagtgctactctacagttgaaggacttcatttctaatagaagattgttt
gatgtgatcccaccagctgttaaagtacctgtgcggcagtttccagtaacagttcacttc
tcaaagaggacacatgatgattatttagggcaagcttataaaaaggttatgtcaatccac
aagaggcttccaccaggtggaatccttgtatttgtcactggacaacgagaagtggattac
ttgtgtaagaaattgcgaagagcatccaaggcgcaaactgctaagaagcctgaaaaaatt
gatggcaatgataatggtccatgcccagacgtaggtgataaggaaattttggaagcatat
gatattgataggaacaaatctgagcaccgtgatgatatattttgcttgtatgatgacgat
gatatgtatcctgggccagattctggttcttctgacaatgaaacagagagtgaaatgaat
actgacactgatgatgaagagtctgttacatatgaaaccacagaagaggatgctccagta
ttagcatttttgaaaaacactgagaactcatctatgttgaaggcgtcatttggagctcta
tcaggaatatcaggagtgccagaaagtgttgagaaatcaagtgatgctacaagtgaagaa
aagaccagtccctctgctcattatttcagtaaatgtacagaacgtattcctctatcgcat
ggtagactccgtgtcttgccactatatgcaatgttgccagcttctcagcagcttcaagtg
tttcaagatatccctgagggggaaagattagttgtggtggcaactaatgttgcagaaacc
tctttaacaattcccggcataaaatatgtagttgatactgggaaagaaaaggttaaaaat
tacgaccatgctactggaatgtcaagttatgaagtccaatggataagcaaggcatcggca
tcccagcgtgctggaagagctggaagaacagggcctgggcactgttaccgtctctactca
gctgcagcatatggtaaagacgatttatttcctgaattcgctgaaccggagattaagaaa
attccagttgaaggcgttgtccttatgctcaagtttatgggtatctgtaaggttgtgaac
tttcctttccctacgcctccaaacaaggaaagtttggttgaagctgagcattgcttaaag
acattggaagcacttgaaaacagtgctgatggaaaacttacaccaatgggaaaggctatg
gcgcaataccccatgagcccacgacattctcggcttcttctgacagtgattaagatcttg
aagagccagcaaggtcttgctagatctaacttcatactgggatatgctgctgctgcagca
gcagctttgagttttactaatctatttctcaagcagtcagatgagtgtgatattaatggc
gaatctgaagaaaataacgctaatccagaagctaatgatccatgtgaacggaagagacag
aagaagcacaaggccatggttagagaggctcaggaaaatttttgtaaccctagcagtgat
gctttaaccattgctcgtgccctacagttttttgagttatcagaaagcccggtggaattc
tgtagaattaattcacttcatttcaaaacaatggaagagatgtcaaaattgagaaagcaa
cttctccgtttaacatttcaccacagcaaattttgcaaggaatttgcttggaattctgga
gactctgatgatgttgagcaggcgtggaggagtgagtctagtaaaagaccattgcaaatt
aatgaagaagaaattctggggcaaggaatctgtgcgggatgggttgatagagttgcaagg
aggaatcacatctattccaggtcatcacgagatgatcaaaaggttcgagctgttcgttat
caatcttgcgcgcttaacgataccatatatctgcaccggtcatcgtctgttgcccaggtt
gccccagagcttgtagtttactcagagctacttaatacaaagaggctatacatgcatggt
gtaaccagtataaagccagggtggcttttaaagtatgcgagctctctttgcactttctct
gctccattggaagattcgaaaccctactatgaccccctgaatgaccaagtctattgttat
gttagtccgattttttctcgacataattggcagcttcccttgcatagtttacctatccaa
gacagcaccagtcgcctgaaggtatttgcgtgtgctttgcttaaaggggatgtcttgcca
tgtctaagaaatgttaaggattttctggcactatcaccatcttttgtcttcgggcctgct
agccaaagaagagttggagatcttcttgccaggatgcgtactgataaaaaattgaagatt
ggtcaatatattagtcgaaaattaattgacagtccagcagcactaagagatgcatggaag
gttgatccaaattttctctatcctgagataaaggcgtggtaccaggataggttccatagc
cactttgatgtaaaatgggagcagatgcaccaagaggttcttcttgagggtcatgagctt
ttcccaaagaggtccaagaaagttaaaggctag
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